Lineage for d1upcb3 (1upc B:375-572)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. Family c.36.1.9: Pyruvate oxidase and decarboxylase PP module [88749] (8 proteins)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. Protein Carboxyethylarginine synthase [102335] (1 species)
  7. Species Streptomyces clavuligerus [TaxId:1901] [102336] (6 PDB entries)
  8. Domain d1upcb3: 1upc B:375-572 [99743]
    Other proteins in same PDB: d1upca1, d1upca2, d1upcb1, d1upcb2, d1upcc1, d1upcc2, d1upcd1, d1upcd2, d1upce1, d1upce2, d1upcf1, d1upcf2
    complexed with mg, so4, tpp

Details for d1upcb3

PDB Entry: 1upc (more details), 2.45 Å

PDB Description: carboxyethylarginine synthase from streptomyces clavuligerus
PDB Compounds: (B:) carboxyethylarginine synthase

SCOPe Domain Sequences for d1upcb3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1upcb3 c.36.1.9 (B:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

SCOPe Domain Coordinates for d1upcb3 are not available.

Timeline for d1upcb3:

Domains from same chain:
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d1upcb1, d1upcb2
Domains from other chains:
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d1upca1, d1upca2, d1upca3, d1upcc1, d1upcc2, d1upcc3, d1upcd1, d1upcd2, d1upcd3, d1upce1, d1upce2, d1upce3, d1upcf1, d1upcf2, d1upcf3