Lineage for d1upbc3 (1upb C:375-563)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. Family c.36.1.9: Pyruvate oxidase and decarboxylase PP module [88749] (8 proteins)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. Protein Carboxyethylarginine synthase [102335] (1 species)
  7. Species Streptomyces clavuligerus [TaxId:1901] [102336] (6 PDB entries)
  8. Domain d1upbc3: 1upb C:375-563 [99734]
    Other proteins in same PDB: d1upba1, d1upba2, d1upbb1, d1upbb2, d1upbc1, d1upbc2, d1upbd1, d1upbd2
    complexed with mg, so4, tpp

Details for d1upbc3

PDB Entry: 1upb (more details), 2.35 Å

PDB Description: carboxyethylarginine synthase from streptomyces clavuligerus
PDB Compounds: (C:) carboxyethylarginine synthase

SCOPe Domain Sequences for d1upbc3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1upbc3 c.36.1.9 (C:375-563) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
petyedgmrvhqvidsmntvmeeaaepgegtivsdigffrhygvlfaradqpfgfltsag
cssfgygipaaigaqmarpdqptfliagdggfhsnssdletiarlnlpivtvvvnndtng
lielyqnighhrshdpavkfggvdfvalaeangvdatratnreellaalrkgaelgrpfl
ievpvnydf

SCOPe Domain Coordinates for d1upbc3 are not available.

Timeline for d1upbc3:

Domains from same chain:
(mouse over for more information)
d1upbc1, d1upbc2
Domains from other chains:
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d1upba1, d1upba2, d1upba3, d1upbb1, d1upbb2, d1upbb3, d1upbd1, d1upbd2, d1upbd3