Class c: Alpha and beta proteins (a/b) [51349] (130 folds) |
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465 |
Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families) there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules |
Family c.36.1.5: Pyruvate oxidase and decarboxylase Pyr module [88724] (7 proteins) the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpha/beta domain of Rossmann-like topology |
Protein Carboxyethylarginine synthase [102330] (1 species) |
Species Streptomyces clavuligerus [TaxId:1901] [102331] (3 PDB entries) |
Domain d1upbb2: 1upb B:12-197 [99730] Other proteins in same PDB: d1upba1, d1upba3, d1upbb1, d1upbb3, d1upbc1, d1upbc3, d1upbd1, d1upbd3 |
PDB Entry: 1upb (more details), 2.35 Å
SCOP Domain Sequences for d1upbb2:
Sequence, based on SEQRES records: (download)
>d1upbb2 c.36.1.5 (B:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus} ptaahallsrlrdhgvgkvfgvvgreaasilfdevegidfvltrheftagvaadvlarit grpqacwatlgpgmtnlstgiatsvldrspvialaaqseshdifpndthqcldsvaivap mskyavelqrpheitdlvdsavnaamtepvgpsfislpvdllgssegidttvpnppantp akpvgv
>d1upbb2 c.36.1.5 (B:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus} ptaahallsrlrdhgvgkvfgvvgreaasilfdevegidfvltrheftagvaadvlarit grpqacwatlgpgmtnlstgiatsvldrspvialaaqseshdifpndthqcldsvaivap mskyavelqrpheitdlvdsavnaamtepvgpsfislpvdllgssegidtpnppantpak pvgv
Timeline for d1upbb2: