Lineage for d1upbb1 (1upb B:198-374)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like
  4. Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families) (S)
    binds cofactor molecules in the opposite direction than classical Rossmann fold
  5. Family c.31.1.3: Pyruvate oxidase and decarboxylase, middle domain [52475] (8 proteins)
    N-terminal domain is Pyr module, and C-terminal domain is PP module of thiamin diphosphate-binding fold
  6. Protein Carboxyethylarginine synthase [102290] (1 species)
  7. Species Streptomyces clavuligerus [TaxId:1901] [102291] (6 PDB entries)
  8. Domain d1upbb1: 1upb B:198-374 [99729]
    Other proteins in same PDB: d1upba2, d1upba3, d1upbb2, d1upbb3, d1upbc2, d1upbc3, d1upbd2, d1upbd3
    complexed with mg, so4, tpp

Details for d1upbb1

PDB Entry: 1upb (more details), 2.35 Å

PDB Description: carboxyethylarginine synthase from streptomyces clavuligerus
PDB Compounds: (B:) carboxyethylarginine synthase

SCOPe Domain Sequences for d1upbb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1upbb1 c.31.1.3 (B:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
vadgwqkaadqaaallaeakhpvlvvgaaairsgavpairalaerlnipvittyiakgvl
pvghelnygavtgymdgilnfpalqtmfapvdlvltvgydyaedlrpsmwqkgiekktvr
isptvnpiprvyrpdvdvvtdvlafvehfetatasfgakqrhdieplrariaeflad

SCOPe Domain Coordinates for d1upbb1 are not available.

Timeline for d1upbb1:

Domains from same chain:
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d1upbb2, d1upbb3
Domains from other chains:
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d1upba1, d1upba2, d1upba3, d1upbc1, d1upbc2, d1upbc3, d1upbd1, d1upbd2, d1upbd3