SCOPe 2.08: Domain d1umyb_: 1umy B:

Lineage for d1umyb_ (1umy B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.26: Homocysteine S-methyltransferase [82282] (1 family)

5. Family c.1.26.1: Homocysteine S-methyltransferase [82283] (2 proteins)
   Pfam PF02574

6. Protein Betaine-homocysteine S-methyltransferase [82284] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [102107] (1 PDB entry)

8. Domain d1umyb_: 1umy B: [99636]
   complexed with bme, zn

Details for d1umyb_

PDB Entry: 1umy, 2.5 Å

PDB Description: bhmt from rat liver

PDB Compounds: (B:) Betaine--homocysteine S-methyltransferase 1

SCOPe Domain Sequences for d1umyb_:

Sequence, based on SEQRES records:

>d1umyb_ c.1.26.1 (B:) Betaine-homocysteine S-methyltransferase {Norway rat (Rattus norvegicus) [TaxId: 10116]}
krgilerlnagevvigdggfvfalekrgyvkagpwtpeaavehpeavrqlhreflragsn
vmqtftfyasedklenrgnyvaekisgqkvneaacdiarqvadegdalvaggvsqtpsyl
scksetevkkifhqqlevfmkknvdfliaeyfehveeavwavealktsgkpiaatmcigp
egdlhgvspgecavrlvkagaaivgvnchfdpstslqtiklmkegleaarlkaylmsqpl
ayhtpdcgkqgfidlpefpfgleprvatrwdiqkyareaynlgvryiggccgfepyhira
iaeelapergflppasekhgswgsgldmhtkpwirararkeywqnlriasgrpynpsmsk
pdawgvtkgaaelmqqkeatteqqlralfe

Sequence, based on observed residues (ATOM records):

>d1umyb_ c.1.26.1 (B:) Betaine-homocysteine S-methyltransferase {Norway rat (Rattus norvegicus) [TaxId: 10116]}
krgilerlnagevvigdggfvfalekrgyvkagpwtpeaavehpeavrqlhreflragsn
vmqtftfyasedaekisgqkvneaacdiarqvadegdalvaggvsqtpsylscksetevk
kifhqqlevfmkknvdfliaeyfehveeavwavealktsgkpiaatmcigpegdlhgvsp
gecavrlvkagaaivgvnchfdpstslqtiklmkegleaarlkaylmsqplayhtpdcgk
qgfidlpefpfgleprvatrwdiqkyareaynlgvryiggccgfepyhiraiaeelaper
gflppasekhgswgsgldmhtkpwirararkeywqnlriasgrpynpsmskpdawgvtkg
aaelmqqkeatteqqlralfe

Timeline for d1umyb_:

• d1umyb_ first appeared in SCOP 1.67
  
• d1umyb_ appears in SCOPe 2.07