SCOPe 2.05: Domain d1ukod_: 1uko D:

Lineage for d1ukod_ (1uko D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein beta-Amylase [51481] (3 species)
   Common fold covers whole protein structure

7. Species Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
   Uniprot P10538

8. Domain d1ukod_: 1uko D: [99504]
   complexed with so4; mutant

Details for d1ukod_

PDB Entry: 1uko, 2.1 Å

PDB Description: crystal structure of soybean beta-amylase mutant substituted at surface region

PDB Compounds: (D:) beta-amylase

SCOPe Domain Sequences for d1ukod_:

Sequence; same for both SEQRES and ATOM records:

>d1ukod_ c.1.8.1 (D:) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}
nmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgpk
qydwrayrsllqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifytn
rsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflesgliidievglgpag
elrypsypqsqgwefpgigefqcydkylkadfkaavaraghpewelpddagkyndvpest
gffksngtyvtekgkffltwysnkllnhgdqildeankaflgckvklaikvsgihwwykv
enhaaeltagyynlndrdgyrpiarmlsrhhailnftclemrdseqpsdaksgpqelvqq
vlsggwreyirvagenalprydataynqiilnarpqgvnnngppklsmfgvtylrlsddl
lqksnfnifkkfvlkmhadqdycanpqkynhaitplkpsapkipievlleatkptrpfpw
ldetdmkvdg

Timeline for d1ukod_:

• d1ukod_ first appeared in SCOP 1.67
  
• d1ukod_ appears in SCOPe 2.04
  
• d1ukod_ appears in SCOPe 2.06
  
• d1ukod_ appears in the current release, SCOPe 2.08