Lineage for d1ud1a1 (1ud1 A:10-248)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070015Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)
  5. 2070093Family b.82.1.2: Germin/Seed storage 7S protein [51187] (5 protein domains)
  6. 2070117Protein Seed storage 7S protein [51188] (6 species)
    duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer
  7. 2070189Species Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)
  8. 2070202Domain d1ud1a1: 1ud1 A:10-248 [99202]
    mutant

Details for d1ud1a1

PDB Entry: 1ud1 (more details), 3.1 Å

PDB Description: Crystal structure of proglycinin mutant C88S
PDB Compounds: (A:) glycinin g1

SCOPe Domain Sequences for d1ud1a1:

Sequence, based on SEQRES records: (download)

>d1ud1a1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}
necqiqklnalkpdnriesegglietwnpnnkpfqcagvalsrctlnrnalrrpsytngp
qeiyiqqgkgifgmiypgspstfeepqqpqqrgqssrpqdrhqkiynfregdliavptgv
awwmynnedtpvvavsiidtnslenqldqmprrfylagnqeqeflkyqqeqgghqsqkgk
hqqeeeneggsilsgftleflehafsvdkqiaknlqgenegedkgaivtvkgglsvikp

Sequence, based on observed residues (ATOM records): (download)

>d1ud1a1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}
necqiqklnalkpdnriesegglietwnpnnkpfqcagvalsrctlnrnalrrpsytngp
qeiyiqqgkgifgmiyprhqkiynfregdliavptgvawwmynnedtpvvavsiidtnsl
enqldqmprrfylagnqeqeflkyqqggsilsgftleflehafsvdkqiaknlqgekgai
vtvkgglsvikp

SCOPe Domain Coordinates for d1ud1a1:

Click to download the PDB-style file with coordinates for d1ud1a1.
(The format of our PDB-style files is described here.)

Timeline for d1ud1a1: