SCOPe 2.08: Domain d1sezb1: 1sez B:13-329,B:442-497

Lineage for d1sezb1 (1sez B:13-329,B:442-497)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
   core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander

4. Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families)

5. Family c.3.1.2: FAD-linked reductases, N-terminal domain [51913] (18 proteins)
   C-terminal domain is alpha+beta is common for the family

6. Protein Protoporphyrinogen oxidase [102183] (2 species)

7. Species Tobacco (Nicotiana tabacum) [TaxId:4097] [102184] (1 PDB entry)

8. Domain d1sezb1: 1sez B:13-329,B:442-497 [98824]
   Other proteins in same PDB: d1seza2, d1sezb2
   complexed with fad, omn, ton

Details for d1sezb1

PDB Entry: 1sez, 2.9 Å

PDB Description: Crystal Structure of Protoporphyrinogen IX Oxidase

PDB Compounds: (B:) Protoporphyrinogen oxidase, mitochondrial

SCOPe Domain Sequences for d1sezb1:

Sequence, based on SEQRES records:

>d1sezb1 c.3.1.2 (B:13-329,B:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
akrvavigagvsglaaayklkihglnvtvfeaegkaggklrsvsqdgliwdegantmtes
egdvtflidslglrekqqfplsqnkryiarngtpvllpsnpidliksnflstgsklqmll
epilwknkklsqvsdshesvsgffqrhfgkevvdylidpfvagtcggdpdslsmhhsfpe
lwnlekrfgsvilgairsklspknekkqgppktsankkrqrgsfsflggmqtltdaickd
lredelrlnsrvlelscsctedsaidswsiisasphkrqseeesfdavimtaplcdvksm
kiakrgnpfllnfipevXyghnydsvldaidkmeknlpglfyagnhrgglsvgkalssgc
naadlvisylesvs

Sequence, based on observed residues (ATOM records):

>d1sezb1 c.3.1.2 (B:13-329,B:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
akrvavigagvsglaaayklkihglnvtvfeaegkaggklrsvsqdgliwdegantmtes
egdvtflidslglrekqqfplsqnkryiarngtpvllpsnpidliksnflstgsklqmll
epilwshesvsgffqrhfgkevvdylidpfvagtcggdpdslsmhhsfpelwnlekrfgs
vilgairsklsktsankkrqrgsfsflggmqtltdaickdlredelrlnsrvlelscsct
edsaidswsiisasphkrqseeesfdavimtaplcdvksmkiakrgnpfllnfipevXyg
hnydsvldaidkmeknlpglfyagnhrgglsvgkalssgcnaadlvisylesvs

Timeline for d1sezb1:

• d1sezb1 first appeared in SCOP 1.67
  
• d1sezb1 appears in SCOPe 2.07