Lineage for d1sdja1 (1sdj A:1-129)

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.21: Diaminopimelate epimerase-like [54505] (1 superfamily)
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. Superfamily d.21.1: Diaminopimelate epimerase-like [54506] (5 families) (S)
    duplication: consists of two similar domain swapped with C-terminal strands
  5. Family d.21.1.2: PhzC/PhzF-like [89863] (4 proteins)
    Pfam PF02567
  6. Protein Hypothetical protein YddE [89864] (1 species)
  7. Species Escherichia coli [TaxId:562] [89865] (4 PDB entries)
    Uniprot P37757
    structural genomics; NESG target ET25
  8. Domain d1sdja1: 1sdj A:1-129 [98807]
    Other proteins in same PDB: d1sdja3, d1sdja4
    structural genomics; NESG target ET25
    complexed with so4

Details for d1sdja1

PDB Entry: 1sdj (more details), 2.3 Å

PDB Description: x-ray structure of ydde_ecoli northeast structural genomics consortium target et25.
PDB Compounds: (A:) Hypothetical protein yddE

SCOPe Domain Sequences for d1sdja1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1sdja1 d.21.1.2 (A:1-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}
mkpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvri
ryftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleq
gtpgfeppl

SCOPe Domain Coordinates for d1sdja1 are not available.

Timeline for d1sdja1:

View in 3D
Domains from same chain:
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d1sdja2, d1sdja3, d1sdja4