Lineage for d1rzkl1 (1rzk L:1-109)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653125Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (29 PDB entries)
  8. 653170Domain d1rzkl1: 1rzk L:1-109 [98210]
    Other proteins in same PDB: d1rzkc1, d1rzkc2, d1rzkg_, d1rzkh1, d1rzkh2, d1rzkl2
    part of anti HIV-1 gp120 Fab 17B
    complexed with nag; mutant

Details for d1rzkl1

PDB Entry: 1rzk (more details), 2.9 Å

PDB Description: hiv-1 yu2 gp120 envelope glycoprotein complexed with cd4 and induced neutralizing antibody 17b
PDB Compounds: (L:) antibody 17b, light chain

SCOP Domain Sequences for d1rzkl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rzkl1 b.1.1.1 (L:1-109) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}
divmtqspatlsvspgeratlscrasesvssdlawyqqkpgqaprlliygastratgvpa
rfsgsgsgaeftltisslqsedfavyycqqynnwpprytfgqgtrleikrt

SCOP Domain Coordinates for d1rzkl1:

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Timeline for d1rzkl1: