Lineage for d1rzia1 (1rzi A:2-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653053Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88520] (18 PDB entries)
  8. 653087Domain d1rzia1: 1rzi A:2-107 [98166]
    Other proteins in same PDB: d1rzia2, d1rzib1, d1rzib2, d1rzic2, d1rzid1, d1rzid2, d1rzie2, d1rzif1, d1rzif2, d1rzig2, d1rzih1, d1rzih2, d1rzii2, d1rzij1, d1rzij2, d1rzik2, d1rzil1, d1rzil2, d1rzim2, d1rzin1, d1rzin2, d1rzio2, d1rzip1, d1rzip2

Details for d1rzia1

PDB Entry: 1rzi (more details), 2.9 Å

PDB Description: Crystal structure of human anti-HIV-1 gp120-reactive antibody 47e fab
PDB Compounds: (A:) Fab 47e light chain

SCOP Domain Sequences for d1rzia1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rzia1 b.1.1.1 (A:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}
iqmtqspslsasvgdrvtitcrasqsissylnwyqqkpgkvpklliyaasslqsgvpsrf
sgsgsgtdftltisslqpedfatyycqqsystshtfgqgtkleik

SCOP Domain Coordinates for d1rzia1:

Click to download the PDB-style file with coordinates for d1rzia1.
(The format of our PDB-style files is described here.)

Timeline for d1rzia1: