Lineage for d1rzgb1 (1rzg B:1-107)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018379Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88520] (19 PDB entries)
  8. 2018388Domain d1rzgb1: 1rzg B:1-107 [98156]
    Other proteins in same PDB: d1rzga1, d1rzga2, d1rzgb2, d1rzgc1, d1rzgc2, d1rzgd2
    part of anti HIV-1 gp120-reactive Fab 412D
    complexed with cys, suc

Details for d1rzgb1

PDB Entry: 1rzg (more details), 2 Å

PDB Description: Crystal structure of Human anti-HIV-1 GP120 reactive antibody 412d
PDB Compounds: (B:) Fab 412d heavy chain

SCOPe Domain Sequences for d1rzgb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rzgb1 b.1.1.1 (B:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

SCOPe Domain Coordinates for d1rzgb1:

Click to download the PDB-style file with coordinates for d1rzgb1.
(The format of our PDB-style files is described here.)

Timeline for d1rzgb1: