Lineage for d1rxvb2 (1rxv B:4-219)

  1. Root: SCOP 1.69
  2. 473232Class c: Alpha and beta proteins (a/b) [51349] (136 folds)
  3. 496308Fold c.120: PIN domain-like [88722] (1 superfamily)
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
  4. 496309Superfamily c.120.1: PIN domain-like [88723] (2 families) (S)
  5. 496336Family c.120.1.2: 5' to 3' exonuclease catalytic domain [53045] (4 proteins)
    contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
  6. 496343Protein Flap endonuclease-1 (Fen-1 nuclease) [53052] (4 species)
  7. 496344Species Archaeon Archaeoglobus fulgidus [TaxId:2234] [102272] (2 PDB entries)
  8. 496347Domain d1rxvb2: 1rxv B:4-219 [98058]
    Other proteins in same PDB: d1rxva1, d1rxvb1

Details for d1rxvb2

PDB Entry: 1rxv (more details), 2.5 Å

PDB Description: Crystal Structure of A. Fulgidus FEN-1 bound to DNA

SCOP Domain Sequences for d1rxvb2:

Sequence, based on SEQRES records: (download)

>d1rxvb2 c.120.1.2 (B:4-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus}
digdlfereeveleyfsgkkiavdafntlyqfisiirqpdgtplkdsqgritshlsgily
rvsnmvevgirpvfvfdgeppefkkaeieerkkrraeaeemwiaalqagdkdakkyaqaa
grvdeyivdsaktllsymgipfvdapsegeaqaaymaakgdveytgsqdydsllfgsprl
arnlaitgkrklpgknvyvdvkpeiiilesnlkrlg

Sequence, based on observed residues (ATOM records): (download)

>d1rxvb2 c.120.1.2 (B:4-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus}
digdlfereeveleyfsgkkiavdafntlyqfisiirqpdgtplkdsqgritshlsgily
rvsnmvevgirpvfvfdgeppefkkaeieerkkrraeaeemwiaalqagdkdakkyaqaa
grvdeyivdsaktllsymgipfvdapsegeaqaaymaakgdveytgsqdydsllfgsprl
arnlaikpeiiilesnlkrlg

SCOP Domain Coordinates for d1rxvb2:

Click to download the PDB-style file with coordinates for d1rxvb2.
(The format of our PDB-style files is described here.)

Timeline for d1rxvb2:

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Domains from same chain:
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d1rxvb1