Lineage for d1rv2c2 (1rv2 C:376-898)

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424451Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 424452Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 424453Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
  6. 424510Protein Family B DNA polymerase [56680] (6 species)
  7. 424520Species Bacteriophage RB69 [TaxId:12353] [56681] (8 PDB entries)
  8. 424528Domain d1rv2c2: 1rv2 C:376-898 [97909]
    Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1

Details for d1rv2c2

PDB Entry: 1rv2 (more details), 2.8 Å

PDB Description: Crystal structure of RB69 gp43 in complex with DNA containing an abasic site analog

SCOP Domain Sequences for d1rv2c2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rv2c2 e.8.1.1 (C:376-898) Family B DNA polymerase {Bacteriophage RB69}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslf

SCOP Domain Coordinates for d1rv2c2:

Click to download the PDB-style file with coordinates for d1rv2c2.
(The format of our PDB-style files is described here.)

Timeline for d1rv2c2: