SCOP 1.67: Domain d1rv2b2: 1rv2 B:376-901

Lineage for d1rv2b2 (1rv2 B:376-901)

1. Root: SCOP 1.67

2. Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (3 proteins)

6. Protein Family B DNA polymerase [56680] (6 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (8 PDB entries)

8. Domain d1rv2b2: 1rv2 B:376-901 [97907]
   Other proteins in same PDB: d1rv2a1, d1rv2b1, d1rv2c1, d1rv2d1

Details for d1rv2b2

PDB Entry: 1rv2, 2.8 Å

PDB Description: Crystal structure of RB69 gp43 in complex with DNA containing an abasic site analog

SCOP Domain Sequences for d1rv2b2:

Sequence, based on SEQRES records:

>d1rv2b2 e.8.1.1 (B:376-901) Family B DNA polymerase {Bacteriophage RB69}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf

Sequence, based on observed residues (ATOM records):

>d1rv2b2 e.8.1.1 (B:376-901) Family B DNA polymerase {Bacteriophage RB69}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnigekvyvlplregnpfgdkciawpsgteitdlikddv
lhwmdytvllektfikplegftsaakldyekkaslfdmf

Timeline for d1rv2b2:

• d1rv2b2 is new in SCOP 1.67
  
• d1rv2b2 appears in SCOP 1.69
  
• d1rv2b2 last appears in SCOP 1.71