SCOP 1.73: Domain d1rrca1: 1rrc A:153-301

Lineage for d1rrca1 (1rrc A:153-301)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.108: HAD-like [56783] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.108.1: HAD-like [56784] (23 families)
   usually contains an insertion (sub)domain after strand 1

5. Family c.108.1.9: phosphatase domain of polynucleotide kinase [82385] (2 proteins)
   no insertion subdomains

6. Protein Polynucleotide kinase, phosphatase domain [82386] (1 species)

7. Species Bacteriophage T4 [TaxId:10665] [82387] (5 PDB entries)

8. Domain d1rrca1: 1rrc A:153-301 [97789]
   Other proteins in same PDB: d1rrca2
   complexed with adp, ca, dms

Details for d1rrca1

PDB Entry: 1rrc, 2.46 Å

PDB Description: t4 polynucleotide kinase bound to 5'-gtc-3' ssdna

PDB Compounds: (A:) Polynucleotide kinase

SCOP Domain Sequences for d1rrca1:

Sequence, based on SEQRES records:

>d1rrca1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
ngtpgkpkavifdvdgtlakmngrgpydlekcdtdvinpmvvelskmyalmgyqivvvsg
resgtkedptkyyrmtrkwvediagvplvmqcqreqgdtrkddvvkeeifwkhiaphfdv
klaiddrtqvvemwrrigvecwqvasgdf

Sequence, based on observed residues (ATOM records):

>d1rrca1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
ngtpgkpkavifdvdgtlakmdvinpmvvelskmyalmgyqivvvsgresgtkedptkyy
rmtrkwvediagvplvmqcqreqgdtrkddvvkeeifwkhiaphfdvklaiddrtqvvem
wrrigvecwqvasgdf

Timeline for d1rrca1:

• d1rrca1 first appeared in SCOP 1.67
  
• d1rrca1 appears in SCOP 1.71
  
• d1rrca1 appears in SCOP 1.75
  
• d1rrca1 appears in the current release, SCOPe 2.08