Lineage for d1rpub_ (1rpu B:)

  1. Root: SCOP 1.69
  2. 496776Class d: Alpha and beta proteins (a+b) [53931] (279 folds)
  3. 516762Fold d.255: Tombusvirus P19 core protein, VP19 [103144] (1 superfamily)
    beta(2)-alpha-beta(2)-alpha; 2 layers: alpha/beta; antiparallel sheet: order 2134
  4. 516763Superfamily d.255.1: Tombusvirus P19 core protein, VP19 [103145] (1 family) (S)
  5. 516764Family d.255.1.1: Tombusvirus P19 core protein, VP19 [103146] (1 protein)
  6. 516765Protein Tombusvirus P19 core protein, VP19 [103147] (2 species)
    an RNA silencing suppressor
  7. 516766Species Carnation italian ringspot virus, CIRV [TaxId:39443] [103149] (1 PDB entry)
  8. 516768Domain d1rpub_: 1rpu B: [97717]
    complexed with siRNA

Details for d1rpub_

PDB Entry: 1rpu (more details), 2.5 Å

PDB Description: crystal structure of cirv p19 bound to sirna

SCOP Domain Sequences for d1rpub_:

Sequence, based on SEQRES records: (download)

>d1rpub_ d.255.1.1 (B:) Tombusvirus P19 core protein, VP19 {Carnation italian ringspot virus, CIRV}
ndtreqangerwdggsggitspfklpdespswtewrlyndetnsnqdnplgfkeswgfgk
vvfkrylrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvsvtisggs
rtlqhlcemairskqellqltp

Sequence, based on observed residues (ATOM records): (download)

>d1rpub_ d.255.1.1 (B:) Tombusvirus P19 core protein, VP19 {Carnation italian ringspot virus, CIRV}
ndtreqangerwdggsggitspfklpdespswtewrlyndenplgfkeswgfgkvvfkry
lrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvsvtisggsrtlqhl
cemairskqellqltp

SCOP Domain Coordinates for d1rpub_:

Click to download the PDB-style file with coordinates for d1rpub_.
(The format of our PDB-style files is described here.)

Timeline for d1rpub_: