Lineage for d1rfdl1 (1rfd L:1-107)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451743Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (126 PDB entries)
  8. 451781Domain d1rfdl1: 1rfd L:1-107 [97374]
    Other proteins in same PDB: d1rfdh1, d1rfdh2, d1rfdl2
    part of anti-cocaine Fab M82G2

Details for d1rfdl1

PDB Entry: 1rfd (more details), 2.09 Å

PDB Description: anti-cocaine antibody m82g2

SCOP Domain Sequences for d1rfdl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rfdl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
divmtqaapsvpvtpgesvsiscrssksllhsngytylhwflqrpgqspqlliyrvsnla
sgvpdrfsgsgsgtaftlrfsrveaedvgvyycmqhleypftfgsgtkleik

SCOP Domain Coordinates for d1rfdl1:

Click to download the PDB-style file with coordinates for d1rfdl1.
(The format of our PDB-style files is described here.)

Timeline for d1rfdl1:

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Domains from same chain:
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d1rfdl2