SCOPe 2.03: Domain d1rc8a1: 1rc8 A:153-301

Lineage for d1rc8a1 (1rc8 A:153-301)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.108: HAD-like [56783] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

4. Superfamily c.108.1: HAD-like [56784] (26 families)
   usually contains an insertion (sub)domain after strand 1

5. Family c.108.1.9: phosphatase domain of polynucleotide kinase [82385] (2 proteins)
   no insertion subdomains

6. Protein Polynucleotide kinase, phosphatase domain [82386] (1 species)

7. Species Bacteriophage T4 [TaxId:10665] [82387] (5 PDB entries)

8. Domain d1rc8a1: 1rc8 A:153-301 [97291]
   Other proteins in same PDB: d1rc8a2
   protein/DNA complex; complexed with adp, ca, dms

Details for d1rc8a1

PDB Entry: 1rc8, 2.75 Å

PDB Description: T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA

PDB Compounds: (A:) Polynucleotide kinase

SCOPe Domain Sequences for d1rc8a1:

Sequence, based on SEQRES records:

>d1rc8a1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
ngtpgkpkavifdvdgtlakmngrgpydlekcdtdvinpmvvelskmyalmgyqivvvsg
resgtkedptkyyrmtrkwvediagvplvmqcqreqgdtrkddvvkeeifwkhiaphfdv
klaiddrtqvvemwrrigvecwqvasgdf

Sequence, based on observed residues (ATOM records):

>d1rc8a1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
ngtpgkpkavifdvdgtlakmtdvinpmvvelskmyalmgyqivvvsgresgtkedptky
yrmtrkwvediagvplvmqcqreqgdtrkddvvkeeifwkhiaphfdvklaiddrtqvve
mwrrigvecwqvasgdf

Timeline for d1rc8a1:

• d1rc8a1 first appeared in SCOP 1.67
  
• d1rc8a1 appears in SCOPe 2.02
  
• d1rc8a1 appears in SCOPe 2.04
  
• d1rc8a1 appears in the current release, SCOPe 2.08