Lineage for d1r3ja1 (1r3j A:1-107)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 452039Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (162 PDB entries)
  8. 452066Domain d1r3ja1: 1r3j A:1-107 [96928]
    Other proteins in same PDB: d1r3ja2, d1r3jb1, d1r3jb2, d1r3jc_
    part of Fab against potassium channel KcsA

Details for d1r3ja1

PDB Entry: 1r3j (more details), 1.9 Å

PDB Description: potassium channel KcsA-Fab complex in high concentration of Tl+

SCOP Domain Sequences for d1r3ja1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1r3ja1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4}
dilltqspailsvspgervsfscrasqsigtdihwyqqrtngsprllikyasesisgips
rfsgsgsgtdftlsinsvesedianyycqqsnrwpftfgsgtkleik

SCOP Domain Coordinates for d1r3ja1:

Click to download the PDB-style file with coordinates for d1r3ja1.
(The format of our PDB-style files is described here.)

Timeline for d1r3ja1: