Lineage for d1q9vb1 (1q9v B:1-111)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652160Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 652366Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (43 PDB entries)
  8. 652371Domain d1q9vb1: 1q9v B:1-111 [96318]
    Other proteins in same PDB: d1q9va1, d1q9va2, d1q9vb2
    part of Fab s25-2
    complexed with kdo, mg, zn

Details for d1q9vb1

PDB Entry: 1q9v (more details), 1.73 Å

PDB Description: S25-2- Kdo monosaccharide complex
PDB Compounds: (B:) S25-2 Fab (IgG1k) heavy chain

SCOP Domain Sequences for d1q9vb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1q9vb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}
evklvesggglvqsggslrlscatsgftftdyymswvrqppgkalewlgfirnkangytt
eyspsvkgrftisrdnsqsilylqmntlraedsatyycardhdgyyerfsywgqgtlvtv
sa

SCOP Domain Coordinates for d1q9vb1:

Click to download the PDB-style file with coordinates for d1q9vb1.
(The format of our PDB-style files is described here.)

Timeline for d1q9vb1:

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Domains from same chain:
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d1q9vb2