Lineage for d1q9qa1 (1q9q A:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653334Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (35 PDB entries)
  8. 653336Domain d1q9qa1: 1q9q A:1-107 [96301]
    Other proteins in same PDB: d1q9qa2, d1q9qb1, d1q9qb2
    part of Fab s25-2
    complexed with kda, kdo, mg, zn

Details for d1q9qa1

PDB Entry: 1q9q (more details), 1.49 Å

PDB Description: S25-2- a(2-8)-a(2-4)Kdo trisaccharide complex
PDB Compounds: (A:) S25-2 Fab (IgG1k) light chain

SCOP Domain Sequences for d1q9qa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1q9qa1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}
divmsqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltitsvqaedlavyyckqsynlrtfgggtkleikr

SCOP Domain Coordinates for d1q9qa1:

Click to download the PDB-style file with coordinates for d1q9qa1.
(The format of our PDB-style files is described here.)

Timeline for d1q9qa1:

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Domains from same chain:
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d1q9qa2