SCOPe 2.05: Domain d1pmod_: 1pmo D:

Lineage for d1pmod_ (1pmo D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.6: Pyridoxal-dependent decarboxylase [69565] (4 proteins)
   automatically mapped to Pfam PF00282

6. Protein Glutamate decarboxylase beta, GadB [102596] (2 species)

7. Species Escherichia coli [TaxId:562] [102597] (5 PDB entries)

8. Domain d1pmod_: 1pmo D: [94911]
   complexed with plr, trs

Details for d1pmod_

PDB Entry: 1pmo, 2.3 Å

PDB Description: Crystal structure of Escherichia coli GadB (neutral pH)

PDB Compounds: (D:) Glutamate decarboxylase beta

SCOPe Domain Sequences for d1pmod_:

Sequence; same for both SEQRES and ATOM records:

>d1pmod_ c.67.1.6 (D:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}
lldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlatfcqtwddenv
hklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtntigsseacml
ggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipmrpgqlfmdpk
rmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhidaasggflap
fvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfnvdylggqigt
fainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgpyefictgrpd
egipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmrimcrrgfemd
faellledykaslkylsdhpklqgiaqqnsfkht

Timeline for d1pmod_:

• d1pmod_ first appeared in SCOP 1.67
  
• d1pmod_ appears in SCOPe 2.04
  
• d1pmod_ appears in SCOPe 2.06
  
• d1pmod_ appears in the current release, SCOPe 2.08