SCOPe 2.08: Domain d1pdlb_: 1pdl B:

Lineage for d1pdlb_ (1pdl B:)

1. Root: SCOPe 2.08

2. Class i: Low resolution protein structures [58117] (25 folds)

3. Fold i.19: Bacteriophage T4 3D cryo-EM reconstruction [103674] (1 superfamily)

4. Superfamily i.19.1: Bacteriophage T4 3D cryo-EM reconstruction [103675] (1 family)

5. Family i.19.1.1: Bacteriophage T4 3D cryo-EM reconstruction [103676] (1 protein)

6. Protein Bacteriophage T4 3D cryo-EM reconstruction [103677] (1 species)

7. Species Bacteriophage T4 [TaxId:10665] [103678] (7 PDB entries)

8. Domain d1pdlb_: 1pdl B: [94558]
   fitting of tail-associated lysozyme gp5

Details for d1pdlb_

PDB Entry: 1pdl

PDB Description: fitting of gp5 in the cryoem reconstruction of the bacteriophage t4 baseplate

PDB Compounds: (B:) Tail-associated lysozyme

SCOPe Domain Sequences for d1pdlb_:

Sequence, based on SEQRES records:

>d1pdlb_ i.19.1.1 (B:) Bacteriophage T4 3D cryo-EM reconstruction {Bacteriophage T4 [TaxId: 10665]}
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktparslsamaatvakssdpad
ppipndsrilfkepvssykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevs
psgrrtrktvdnlyditnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgd
etktvegngtilvkgnvtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwd
vggdwtekmasmssissgqytidgsridig

Sequence, based on observed residues (ATOM records):

>d1pdlb_ i.19.1.1 (B:) Bacteriophage T4 3D cryo-EM reconstruction {Bacteriophage T4 [TaxId: 10665]}
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktdpadppipndsrilfkepvs
sykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevspsgrrtrktvdnlydi
tnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgdetktvegngtilvkgn
vtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwdvggdwtekmasmssis
sgqytidgsridig

Timeline for d1pdlb_:

• d1pdlb_ first appeared in SCOP 1.67
  
• d1pdlb_ appears in SCOPe 2.07