Lineage for d1pd0a5 (1pd0 A:216-300)

  1. Root: SCOPe 2.06
  2. 2256768Class g: Small proteins [56992] (94 folds)
  3. 2262912Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. 2263854Superfamily g.41.10: Zn-finger domain of Sec23/24 [82919] (1 family) (S)
  5. 2263855Family g.41.10.1: Zn-finger domain of Sec23/24 [82920] (2 protein domains)
  6. 2263862Protein Sec24 [82923] (1 species)
  7. 2263863Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82924] (4 PDB entries)
  8. 2263865Domain d1pd0a5: 1pd0 A:216-300 [94506]
    Other proteins in same PDB: d1pd0a1, d1pd0a2, d1pd0a3, d1pd0a4
    complexed with a snare peptide
    complexed with zn

Details for d1pd0a5

PDB Entry: 1pd0 (more details), 2.6 Å

PDB Description: Crystal structure of the COPII coat subunit, Sec24, complexed with a peptide from the SNARE protein Sed5 (yeast syntaxin-5)
PDB Compounds: (A:) protein transport protein SEC24

SCOPe Domain Sequences for d1pd0a5:

Sequence, based on SEQRES records: (download)

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
didppplnedglivrcrrcrsymnpfvtfieqgrrwrcnfcrlandvpmqmdqsdpndpk
srydrneikcavmeymapkeytlrq

Sequence, based on observed residues (ATOM records): (download)

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
didppplnedglivrcrrcrsymnpfvtfieqgrrwrcnfcrlandvpmqmdqpksrydr
neikcavmeymapkeytlrq

SCOPe Domain Coordinates for d1pd0a5:

Click to download the PDB-style file with coordinates for d1pd0a5.
(The format of our PDB-style files is described here.)

Timeline for d1pd0a5: