Lineage for d1p4db_ (1p4d B:)

  1. Root: SCOP 1.67
  2. 405194Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
  3. 415324Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
    alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
  4. 415325Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (5 families) (S)
  5. 415366Family d.89.1.5: Relaxase domain [103120] (2 proteins)
    circular permutation of the common fold
  6. 415367Protein F factor TraI relaxase [103121] (1 species)
  7. 415368Species Escherichia coli [TaxId:562] [103122] (1 PDB entry)
  8. 415370Domain d1p4db_: 1p4d B: [94102]

Details for d1p4db_

PDB Entry: 1p4d (more details), 2.6 Å

PDB Description: f factor trai relaxase domain

SCOP Domain Sequences for d1p4db_:

Sequence, based on SEQRES records: (download)

>d1p4db_ d.89.1.5 (B:) F factor TraI relaxase {Escherichia coli}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafsgrsqt
ireavgedaslksrdvaaldtrkskqhvdpeikmaewmqtlketgfdirayrdaadqrad
lrtltpg

Sequence, based on observed residues (ATOM records): (download)

>d1p4db_ d.89.1.5 (B:) F factor TraI relaxase {Escherichia coli}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafshvdpe
ikmaewmqtlketgfdirayrdaadqradlrtltpg

SCOP Domain Coordinates for d1p4db_:

Click to download the PDB-style file with coordinates for d1p4db_.
(The format of our PDB-style files is described here.)

Timeline for d1p4db_: