Lineage for d1p4da_ (1p4d A:)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2569784Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
    alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
  4. 2569785Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families) (S)
  5. 2569866Family d.89.1.5: Relaxase domain [103120] (3 proteins)
    circular permutation of the common fold
    automatically mapped to Pfam PF08751
  6. 2569867Protein F factor TraI relaxase [103121] (1 species)
  7. 2569868Species Escherichia coli [TaxId:562] [103122] (1 PDB entry)
  8. 2569869Domain d1p4da_: 1p4d A: [94101]
    complexed with edo, mg

Details for d1p4da_

PDB Entry: 1p4d (more details), 2.6 Å

PDB Description: f factor trai relaxase domain
PDB Compounds: (A:) TraI protein

SCOPe Domain Sequences for d1p4da_:

Sequence, based on SEQRES records: (download)

>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli [TaxId: 562]}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafsgrsqt
ireavgedaslksrdvaaldtrkskqhvdpeikmaewmqtlketgfdirayrdaadqrad
lrtltpg

Sequence, based on observed residues (ATOM records): (download)

>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli [TaxId: 562]}
mmsiaqvrsagsagnyytdkdnyyvlgsmgerwagrgaeqlglqgsvdkdvftrllegrl
pdgadlsrmqdgsnrhrpgydltfsapksvsmmamlggdkrlidahnqavdfavrqveal
astrvmtdgqsetvltgnlvmalfnhdtsrdqepqlhthavvanvtqhngewktlssdkv
gktgfienvyanqiafgrlyreklkeqvealgyetevvgkhgmwempgvpveafsvdpei
kmaewmqtlketgfdirayrdaadqradlrtltpg

SCOPe Domain Coordinates for d1p4da_:

Click to download the PDB-style file with coordinates for d1p4da_.
(The format of our PDB-style files is described here.)

Timeline for d1p4da_: