SCOPe 2.06: Domain d1otda_: 1otd A:

Lineage for d1otda_ (1otd A:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
   alpha-beta(2)-alpha(2)-beta(3)

5. Family d.110.3.1: PYP-like [55786] (3 proteins)

6. Protein Photoactive yellow protein, PYP [55787] (1 species)

7. Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (68 PDB entries)
   Uniprot P16113

8. Domain d1otda_: 1otd A: [93513]
   complexed with hc4

Details for d1otda_

PDB Entry: 1otd, 1.25 Å

PDB Description: strong hydrogen bonds in photoactive yellow protein and their role in its photocycle

PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1otda_:

Sequence; same for both SEQRES and ATOM records:

>d1otda_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
sqldnlafgaiqldgdgtilqynaaegditgrnpkevigknffkdvapctdspefsgkfk
egvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvkrv

Timeline for d1otda_:

• d1otda_ first appeared in SCOP 1.67
  
• d1otda_ appears in SCOPe 2.05
  
• d1otda_ appears in SCOPe 2.07
  
• d1otda_ appears in the current release, SCOPe 2.08