SCOPe 2.04: Domain d1ot9a_: 1ot9 A:

Lineage for d1ot9a_ (1ot9 A:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
   alpha-beta(2)-alpha(2)-beta(3)

5. Family d.110.3.1: PYP-like [55786] (3 proteins)

6. Protein Photoactive yellow protein, PYP [55787] (1 species)

7. Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (62 PDB entries)
   Uniprot P16113

8. Domain d1ot9a_: 1ot9 A: [93510]
   complexed with hc4

Details for d1ot9a_

PDB Entry: 1ot9, 1 Å

PDB Description: cryotrapped state in wild type photoactive yellow protein, induced with continuous illumination at 110k

PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1ot9a_:

Sequence; same for both SEQRES and ATOM records:

>d1ot9a_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
mehvafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigk
nffkdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywv
fvkrv

Timeline for d1ot9a_:

• d1ot9a_ first appeared in SCOP 1.67
  
• d1ot9a_ appears in SCOPe 2.03
  
• d1ot9a_ appears in SCOPe 2.05
  
• d1ot9a_ appears in the current release, SCOPe 2.08