SCOPe 2.06: Domain d1orrd1: 1orr D:3-339

Lineage for d1orrd1 (1orr D:3-339)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein CDP-tyvelose-2-epimerase [102138] (1 species)

7. Species Salmonella typhi [TaxId:90370] [102139] (1 PDB entry)

8. Domain d1orrd1: 1orr D:3-339 [93463]
   Other proteins in same PDB: d1orra2, d1orrb2, d1orrc2, d1orrd2
   complexed with cdp, nad

Details for d1orrd1

PDB Entry: 1orr, 1.5 Å

PDB Description: Crystal Structure of CDP-Tyvelose 2-Epimerase complexed with NAD and CDP

PDB Compounds: (D:) CDP-tyvelose-2-epimerase

SCOPe Domain Sequences for d1orrd1:

Sequence, based on SEQRES records:

>d1orrd1 c.2.1.2 (D:3-339) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}
kllitggcgflgsnlasfalsqgidlivfdnlsrkgatdnlhwlsslgnfefvhgdirnk
ndvtrlitkympdscfhlagqvamttsidnpcmdfeinvggtlnlleavrqynsncniiy
sstnkvygdleqykynetetrytcvdkpngydestqldfhspygcskgaadqymldyari
fglntvvfrhssmyggrqfatydqgwvgwfcqkaveiknginkpftisgngkqvrdvlha
edmislyftalanvskirgnafniggtivnslsllelfklledycnidmrftnlpvresd
qrvfvadikkitnaidwspkvsakdgvqkmydwtssi

Sequence, based on observed residues (ATOM records):

>d1orrd1 c.2.1.2 (D:3-339) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}
kllitggcgflgsnlasfalsqgidlivfdnlsrkgatdnlhwlsslgnfefvhgdirnk
ndvtrlitkympdscfhlagqvamttsidnpcmdfeinvggtlnlleavrqynsncniiy
sstnkvygdleqykynetetrytcvdkpngydestqldfhspygcskgaadqymldyari
fglntvvfrhssmyggrqfatydqgwvgwfcqkaveikngipftisgngkqvrdvlhaed
mislyftalanvskirgnafniggtivnslsllelfklledycnidmrftnlpvresdqr
vfvadikkitnaidwspkvsakdgvqkmydwtssi

Timeline for d1orrd1:

• d1orrd1 first appeared in SCOP 1.67, called d1orrd_
  
• d1orrd1 was called d1orrd_ in SCOPe 2.05
  
• d1orrd1 appears in SCOPe 2.07
  
• d1orrd1 appears in the current release, SCOPe 2.08