SCOP 1.69: Domain d1ogym2: 1ogy M:12-681

Lineage for d1ogym2 (1ogy M:12-681)

1. Root: SCOP 1.69

2. Class c: Alpha and beta proteins (a/b) [51349] (136 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (9 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein Periplasmic nitrate reductase alpha chain [53717] (2 species)

7. Species Rhodobacter sphaeroides [TaxId:1063] [102672] (1 PDB entry)

8. Domain d1ogym2: 1ogy M:12-681 [92971]
   Other proteins in same PDB: d1ogya1, d1ogyb_, d1ogyc1, d1ogyd_, d1ogye1, d1ogyf_, d1ogyg1, d1ogyh_, d1ogyi1, d1ogyj_, d1ogyk1, d1ogyl_, d1ogym1, d1ogyn_, d1ogyo1, d1ogyp_

Details for d1ogym2

PDB Entry: 1ogy, 3.2 Å

PDB Description: crystal structure of the heterodimeric nitrate reductase from rhodobacter sphaeroides

SCOP Domain Sequences for d1ogym2:

Sequence; same for both SEQRES and ATOM records:

>d1ogym2 c.81.1.1 (M:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides}
irwskapcrfcgtgcgvmvgtrdgqvvathgdtqaevnrglncvkgyflskimygedrlt
tpllrmkdgvyhkegefapvswdeafdvmaaqaklvlkekapeavgmfgsgqwtiwegya
asklmragfrsnnldpnarhcmasaatafmrtfgmdepmgcyddfeaadafvlwgsnmae
mhpilwsrltdrrlshehvrvavlstfthrssdlsdtpiifrpgtdrailnyiahhiist
grvnrdfvdrhtnfalgatdigyglrpehqlqlaakgaadagamtptdfetfaalvseyt
lekaaeisgvepalleelaelyadpdrkwmslwtmgfnqhvrgvwanhmvynlhlltgki
sepgnspfsltgqpfacgtarevgtfahrlpadmvvtnpehrahaeeiwklpagllpdwv
gahaveqdrklhdgeinfywvqvnnnmqaapnidqetypgyrnpenfivvsdayptvtgr
aadlvlpaamwvekegaygnaerrthfwhqlveapgearsdlwqlmefskrfttdevwpe
eilsaapayrgktlfevlfangsvdrfpasdvnpdhanheaalfgfypqkglfeeyaafg
rghghdlapfdtyhevrglhwpvvegeetrwryregfdpyvkpgeglrfygkpdgravil
gvpyeppaes

Timeline for d1ogym2:

• d1ogym2 first appeared in SCOP 1.67
  
• d1ogym2 appears in SCOP 1.71
  
• d1ogym2 appears in the current release, SCOPe 2.08