SCOP 1.69: Domain d1odua2: 1odu A:7-356

Lineage for d1odua2 (1odu A:7-356)

1. Root: SCOP 1.69

2. Class c: Alpha and beta proteins (a/b) [51349] (136 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (31 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (11 families)

5. Family c.1.8.11: Putative alpha-L-fucosidase, catalytic domain [102079] (1 protein)
   glycosyl hydrolase family 29; contains additional beta-barrel with a topological similarity to the C-terminal domain of alpha amylases

6. Protein Putative alpha-L-fucosidase, catalytic domain [102080] (1 species)

7. Species Thermotoga maritima [TaxId:243274] [102081] (3 PDB entries)
   TM0306

8. Domain d1odua2: 1odu A:7-356 [92785]
   Other proteins in same PDB: d1odua1, d1odub1

Details for d1odua2

PDB Entry: 1odu, 2.8 Å

PDB Description: crystal structure of thermotoga maritima alpha-fucosidase in complex with fucose

SCOP Domain Sequences for d1odua2:

Sequence, based on SEQRES records:

>d1odua2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatptgelgkvpmdawffqnpyae
wyenslrikesptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyviptt
khhdgfclwgtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepir
ypedlsyirpntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkh
pegsvndrwgvphwdfktaeyhvnypgdlpgykweftrgiglsfgynrnegpehmlsveq
lvytlvdvvskggnlllnvgpkgdgtipdlqkerllglgewlrkygdaiy

Sequence, based on observed residues (ATOM records):

>d1odua2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatpdawffqnpyaewyenslrik
esptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyvipttkhhdgfclw
gtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepirypedlsyir
pntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkhpegsvndrw
gvphwdfktaedlpgykweftrgiglsfgynrnehmlsveqlvytlvdvvskggnlllnv
gpkgdgtipdlqkerllglgewlrkygdaiy

Timeline for d1odua2:

• d1odua2 first appeared in SCOP 1.67
  
• d1odua2 appears in SCOP 1.71
  
• d1odua2 appears in the current release, SCOPe 2.08