SCOP 1.67: Domain d1nwud1: 1nwu D:22-260,D:329-383

Lineage for d1nwud1 (1nwu D:22-260,D:329-383)

1. Root: SCOP 1.67

2. Class c: Alpha and beta proteins (a/b) [51349] (130 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (28 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (10 families)

5. Family c.1.8.5: Type II chitinase [51534] (14 proteins)
   glycosylase family 18

6. Protein Chitinase-3 like protein 1 (GP-39, YKL-40) [89482] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [89483] (7 PDB entries)

8. Domain d1nwud1: 1nwu D:22-260,D:329-383 [92275]
   Other proteins in same PDB: d1nwua2, d1nwub2, d1nwuc2, d1nwud2
   complexed with nag

Details for d1nwud1

PDB Entry: 1nwu, 2.2 Å

PDB Description: crystal structure of human cartilage gp39 (hc-gp39) in complex with chitotetraose

SCOP Domain Sequences for d1nwud1:

Sequence; same for both SEQRES and ATOM records:

>d1nwud1 c.1.8.5 (D:22-260,D:329-383) Chitinase-3 like protein 1 (GP-39, YKL-40) {Human (Homo sapiens)}
yklvcyytswsqyregdgscfpdaldrflcthiiysfanisndhidtwewndvtlygmln
tlknrnpnlktllsvggwnfgsqrfskiasntqsrrtfiksvppflrthgfdgldlawly
pgrrdkqhfttlikemkaefikeaqpgkkqlllsaalsagkvtidssydiakisqhldfi
simtydfhgawrgttghhsplfrgqedaspdrfsntdyavgymlrlgapasklvmgiptX
ddqesvkskvqylkdrqlagamvwaldlddfqgsfcgqdlrfpltnaikdalaat

Timeline for d1nwud1:

• d1nwud1 is new in SCOP 1.67
  
• d1nwud1 appears in SCOP 1.69
  
• d1nwud1 appears in the current release, SCOPe 2.08