SCOP 1.75: Domain d1nkea2: 1nke A:469-876

Lineage for d1nkea2 (1nke A:469-876)

1. Root: SCOP 1.75

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (4 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (42 PDB entries)
   Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
   Uniprot Q45458 298-876 # 88% sequence identity

8. Domain d1nkea2: 1nke A:469-876 [91940]
   Other proteins in same PDB: d1nkea1
   complexed with dcp, mg, so4, suc

Details for d1nkea2

PDB Entry: 1nke, 1.8 Å

PDB Description: a bacillus dna polymerase i product complex bound to a cytosine- thymine mismatch after a single round of primer extension, following incorporation of dctp.

PDB Compounds: (A:) DNA polymerase I

SCOP Domain Sequences for d1nkea2:

Sequence; same for both SEQRES and ATOM records:

>d1nkea2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Timeline for d1nkea2:

• d1nkea2 first appeared in SCOP 1.67
  
• d1nkea2 appears in SCOP 1.73
  
• d1nkea2 appears in SCOPe 2.01
  
• d1nkea2 appears in the current release, SCOPe 2.08