SCOPe 2.05: Domain d1njjb2: 1njj B:44-283

Lineage for d1njjb2 (1njj B:44-283)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (3 proteins)

6. Protein Eukaryotic ornithine decarboxylase [51423] (3 species)

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
   Uniprot P07805

8. Domain d1njjb2: 1njj B:44-283 [91908]
   Other proteins in same PDB: d1njja1, d1njjb1, d1njjc1, d1njjd1
   complexed with get, orx

Details for d1njjb2

PDB Entry: 1njj, 2.45 Å

PDB Description: crystal structure determination of t. brucei ornithine decarboxylase bound to d-ornithine and to g418

PDB Compounds: (B:) ornithine decarboxylase

SCOPe Domain Sequences for d1njjb2:

Sequence, based on SEQRES records:

>d1njjb2 c.1.6.1 (B:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristddslar
crlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgt
elgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Sequence, based on observed residues (ATOM records):

>d1njjb2 c.1.6.1 (B:44-283) Eukaryotic ornithine decarboxylase {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
dlgdivrkhetwkkclprvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigv
ppekiiyanpckqishiryardsgvdvmtfdcvdelekvakthpkakmvlristvkfgak
vedcrfileqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhild
igggfpgtrdaplkfeeiagvinnalekhfppdlkltivaepgryyvasa

Timeline for d1njjb2:

• d1njjb2 first appeared in SCOP 1.67
  
• d1njjb2 appears in SCOPe 2.04
  
• d1njjb2 appears in SCOPe 2.06
  
• d1njjb2 appears in the current release, SCOPe 2.08