SCOPe 2.05: Domain d1niua2: 1niu A:12-244

Lineage for d1niua2 (1niu A:12-244)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (3 proteins)

6. Protein Alanine racemase [51421] (3 species)

7. Species Bacillus stearothermophilus [TaxId:1422] [51422] (8 PDB entries)

8. Domain d1niua2: 1niu A:12-244 [91894]
   Other proteins in same PDB: d1niua1, d1niub1
   complexed with dcs

Details for d1niua2

PDB Entry: 1niu, 2.2 Å

PDB Description: alanine racemase with bound inhibitor derived from l-cycloserine

PDB Compounds: (A:) alanine racemase

SCOPe Domain Sequences for d1niua2:

Sequence; same for both SEQRES and ATOM records:

>d1niua2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
vdldaiydnvenlrrllpddthimavvkanayghgdvqvartaleagasrlavafldeal
alrekgieapilvlgasrpadaalaaqqrialtvfrsdwleeasalysgpfpihfhlkmd
tgmgrlgvkdeeetkrivalierhphfvleglythfatadevntdyfsyqytrflhmlew
lpsrpplvhcansaaslrfpdrtfnmvrfgiamyglapspgikpllpyplkea

Timeline for d1niua2:

• d1niua2 first appeared in SCOP 1.67
  
• d1niua2 appears in SCOPe 2.04
  
• d1niua2 appears in SCOPe 2.06
  
• d1niua2 appears in the current release, SCOPe 2.08