Lineage for d1nakl1 (1nak L:1-107)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451743Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (126 PDB entries)
  8. 451885Domain d1nakl1: 1nak L:1-107 [91757]
    Other proteins in same PDB: d1nakh1, d1nakh2, d1naki1, d1naki2, d1nakl2, d1nakm2

Details for d1nakl1

PDB Entry: 1nak (more details), 2.57 Å

PDB Description: igg1 fab fragment (83.1) complex with 16-residue peptide (residues 304-321 of hiv-1 gp120 (mn isolate))

SCOP Domain Sequences for d1nakl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1nakl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
dvvmtqspvslpvslgdqasiscrssqslghssgntylhwflqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftfkisrveaedlgvyfcfqtthdpytfgggtkleik

SCOP Domain Coordinates for d1nakl1:

Click to download the PDB-style file with coordinates for d1nakl1.
(The format of our PDB-style files is described here.)

Timeline for d1nakl1: