Lineage for d1nakh1 (1nak H:1-113)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018217Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] [88558] (32 PDB entries)
  8. 2018249Domain d1nakh1: 1nak H:1-113 [91753]
    Other proteins in same PDB: d1nakh2, d1naki2, d1nakl1, d1nakl2, d1nakm1, d1nakm2
    part of Fab 83.1 against HIV-1 gp120

Details for d1nakh1

PDB Entry: 1nak (more details), 2.57 Å

PDB Description: igg1 fab fragment (83.1) complex with 16-residue peptide (residues 304-321 of hiv-1 gp120 (mn isolate))
PDB Compounds: (H:) Fab 83.1 - heavy chain

SCOPe Domain Sequences for d1nakh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1nakh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d1nakh1:

Click to download the PDB-style file with coordinates for d1nakh1.
(The format of our PDB-style files is described here.)

Timeline for d1nakh1: