SCOPe 2.01: Domain d1gzmb_: 1gzm B:

Lineage for d1gzmb_ (1gzm B:)

1. Root: SCOPe 2.01

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.13: Family A G protein-coupled receptor-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Family A G protein-coupled receptor-like [81321] (2 families)

5. Family f.13.1.2: Rhodopsin-like [81320] (2 proteins)
   Individual TM segments have a number of kinks and distortions

6. Protein Rhodopsin [56876] (1 species)

7. Species Cow (Bos taurus) [TaxId:9913] [56877] (8 PDB entries)
   Uniprot P02699

8. Domain d1gzmb_: 1gzm B: [90534]
   complexed with c8e, lda, pef, plm, ret, zn

Details for d1gzmb_

PDB Entry: 1gzm, 2.65 Å

PDB Description: structure of bovine rhodopsin in a trigonal crystal form

PDB Compounds: (B:) rhodopsin

SCOPe Domain Sequences for d1gzmb_:

Sequence, based on SEQRES records:

>d1gzmb_ f.13.1.2 (B:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgknplgdde

Sequence, based on observed residues (ATOM records):

>d1gzmb_ f.13.1.2 (B:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgkndde

Timeline for d1gzmb_:

• d1gzmb_ first appeared in SCOP 1.67
  
• d1gzmb_ appears in SCOP 1.75
  
• d1gzmb_ appears in SCOPe 2.02
  
• d1gzmb_ appears in the current release, SCOPe 2.08