SCOPe 2.06: Family d.38.1.5: PaaI/YdiI-like

Lineage for Family d.38.1.5: PaaI/YdiI-like

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
   core: beta-alpha-beta(4); 2 layers: alpha/beta

4. Superfamily d.38.1: Thioesterase/thiol ester dehydrase-isomerase [54637] (9 families)

5. Family d.38.1.5: PaaI/YdiI-like [89902] (15 proteins)

Proteins:

1. 4-hydroxybenzoyl CoA thioesterase [102914] (1 species)

   • Species Arthrobacter sp., strain su [TaxId:1667] [102915] (3 PDB entries)

2. Hypothetical protein CC3309 [143177] (1 species)

   • Species Caulobacter crescentus [TaxId:155892] [143178] (1 PDB entry)
     Uniprot Q9A395 12-153

3. Hypothetical protein HI1161 [89905] (1 species)

   • Species Haemophilus influenzae [TaxId:727] [89906] (3 PDB entries)

4. Hypothetical protein PA1835 [143182] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [143183] (1 PDB entry)
     Uniprot Q9I2R0 1-145

5. Hypothetical protein PA5026 [110900] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [110901] (1 PDB entry)
     Uniprot Q9HUE3

6. Hypothetical protein PA5202 [143175] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [143176] (1 PDB entry)
     Uniprot Q9HTY7 4-129

7. Hypothetical protein PH1136 [102916] (1 species)

   • Species Pyrococcus horikoshii [TaxId:53953] [102917] (1 PDB entry)

8. Hypothetical protein RHA1_ro05818 [160184] (1 species)
   includes two extra N-terminal helices forming an interlocking four-helical bundle in the dimer

   • Species Rhodococcus sp. RHA1 [TaxId:101510] [160185] (1 PDB entry)
     Uniprot Q0S4E1 7-209

9. Hypothetical protein Them2 [143179] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [143181] (2 PDB entries)
      Uniprot Q9NPJ3 19-139! Uniprot Q9NPJ3 3-138

   2. Species Mouse (Mus musculus) [TaxId:10090] [143180] (1 PDB entry)
      Uniprot Q9CQR4 13-139

10. Hypothetical protein YbdB [102912] (1 species)

    • Species Escherichia coli [TaxId:562] [102913] (1 PDB entry)

11. Hypothetical protein YdiI [102910] (1 species)

    • Species Escherichia coli [TaxId:562] [102911] (6 PDB entries)

12. Phenylacetic acid degradation protein PaaI [89903] (2 species)

    1. Species Escherichia coli [TaxId:562] [89904] (2 PDB entries)

    2. Species Thermus thermophilus [TaxId:274] [102909] (1 PDB entry)

13. Putative thioesterase SO4397 [110898] (1 species)

    • Species Shewanella oneidensis [TaxId:70863] [110899] (1 PDB entry)
      Uniprot Q8E989

14. Transcription factor FapR, C-terminal domain [143184] (1 species)

    • Species Bacillus subtilis [TaxId:1423] [143185] (2 PDB entries)
      Uniprot O34835 66-186! Uniprot O34835 73-183

15. automated matches [190102] (7 species)
    not a true protein

    1. Species Arthrobacter sp. [TaxId:1667] [194804] (11 PDB entries)

    2. Species Escherichia coli [TaxId:83333] [257785] (2 PDB entries)

    3. Species Haemophilus influenzae [TaxId:727] [186964] (1 PDB entry)

    4. Species Human (Homo sapiens) [TaxId:9606] [187682] (2 PDB entries)

    5. Species Mouse (Mus musculus) [TaxId:10090] [187583] (1 PDB entry)

    6. Species Thermus thermophilus HB8 [TaxId:300852] [186824] (5 PDB entries)

    7. Species Zebrafish (Danio rerio) [TaxId:7955] [311409] (1 PDB entry)

More info for Family d.38.1.5: PaaI/YdiI-like

Timeline for Family d.38.1.5: PaaI/YdiI-like:

• Family d.38.1.5: PaaI/YdiI-like first appeared in SCOP 1.65
  
• Family d.38.1.5: PaaI/YdiI-like appears in SCOPe 2.05
  
• Family d.38.1.5: PaaI/YdiI-like appears in SCOPe 2.07
  
• Family d.38.1.5: PaaI/YdiI-like appears in the current release, SCOPe 2.08