SCOP 1.73: Family d.38.1.5: PaaI/YdiI-like

Lineage for Family d.38.1.5: PaaI/YdiI-like

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
   core: beta-alpha-beta(4); 2 layers: alpha/beta

4. Superfamily d.38.1: Thioesterase/thiol ester dehydrase-isomerase [54637] (8 families)

5. Family d.38.1.5: PaaI/YdiI-like [89902] (13 proteins)

Proteins:

1. 4-hydroxybenzoyl CoA thioesterase [102914] (1 species)

   • Species Arthrobacter sp., strain su [TaxId:1667] [102915] (3 PDB entries)

2. Hypothetical protein CC3309 [143177] (1 species)

   • Species Caulobacter crescentus [TaxId:155892] [143178] (1 PDB entry)

3. Hypothetical protein HI1161 [89905] (1 species)

   • Species Haemophilus influenzae [TaxId:727] [89906] (3 PDB entries)

4. Hypothetical protein PA1835 [143182] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [143183] (1 PDB entry)

5. Hypothetical protein PA5026 [110900] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [110901] (1 PDB entry)

6. Hypothetical protein PA5202 [143175] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [143176] (1 PDB entry)

7. Hypothetical protein PH1136 [102916] (1 species)

   • Species Archaeon Pyrococcus horikoshii [TaxId:53953] [102917] (1 PDB entry)

8. Hypothetical protein Them2 [143179] (2 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [143181] (2 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [143180] (1 PDB entry)

9. Hypothetical protein YbdB [102912] (1 species)

   • Species Escherichia coli [TaxId:562] [102913] (1 PDB entry)

10. Hypothetical protein YdiI [102910] (1 species)

    • Species Escherichia coli [TaxId:562] [102911] (3 PDB entries)

11. Phenylacetic acid degradation protein PaaI [89903] (2 species)

    1. Species Escherichia coli [TaxId:562] [89904] (2 PDB entries)

    2. Species Thermus thermophilus [TaxId:274] [102909] (5 PDB entries)

12. Putative thioesterase SO4397 [110898] (1 species)

    • Species Shewanella oneidensis [TaxId:70863] [110899] (1 PDB entry)

13. Transcription factor FapR, C-terminal domain [143184] (1 species)

    • Species Bacillus subtilis [TaxId:1423] [143185] (2 PDB entries)

More info for Family d.38.1.5: PaaI/YdiI-like

Timeline for Family d.38.1.5: PaaI/YdiI-like:

• Family d.38.1.5: PaaI/YdiI-like first appeared in SCOP 1.65
  
• Family d.38.1.5: PaaI/YdiI-like appears in SCOP 1.71
  
• Family d.38.1.5: PaaI/YdiI-like appears in SCOP 1.75
  
• Family d.38.1.5: PaaI/YdiI-like appears in the current release, SCOPe 2.08