SCOPe 2.06: Protein: N-methyl-D-aspartate receptor subunit 1

Lineage for Protein: N-methyl-D-aspartate receptor subunit 1

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)
Protein N-methyl-D-aspartate receptor subunit 1 [89787] (3 species)

Species:

Homo sapiens [TaxId:9606] [314718] (12 PDB entries)
1. Domain for 5h8f:
  - Domain d5h8fb_: 5h8f B: [314808]
    Other proteins in same PDB: d5h8fa_
    automated match to d1pb7a_
    complexed with glu, gly, gol
2. Domain for 5h8h:
  - Domain d5h8hb_: 5h8h B: [315028]
    Other proteins in same PDB: d5h8ha_
    automated match to d1pb7a_
    complexed with 5yc, act, ca, glu, gly
3. Domain for 5h8n:
  - Domain d5h8nb_: 5h8n B: [314891]
    Other proteins in same PDB: d5h8na_
    automated match to d1pb7a_
    complexed with 5yd, ca, glu, gly
4. Domain for 5h8q:
  - Domain d5h8qb_: 5h8q B: [315648]
    Other proteins in same PDB: d5h8qa_
    automated match to d1pb7a_
    complexed with 5ye, act, glu, gly
5. Domain for 5h8r:
  - Domain d5h8rb_: 5h8r B: [314719]
    Other proteins in same PDB: d5h8ra_
    automated match to d1pb7a_
    complexed with 5yf, act, glu, gly
6. Domain for 5i2j:
  - Domain d5i2jb_: 5i2j B: [315012]
    Other proteins in same PDB: d5i2ja_
    automated match to d1pb7a_
    complexed with 67g, act, glu, gly
7. Domain for 5i2k:
  - Domain d5i2kb_: 5i2k B: [315008]
    Other proteins in same PDB: d5i2ka_
    automated match to d1pb7a_
    complexed with 67h, glu, gly
8. Domain for 5i2n:
  - Domain d5i2nb_: 5i2n B: [314915]
    Other proteins in same PDB: d5i2na_
    automated match to d1pb7a_
    complexed with 67j, ca, epe, glu, gly
9. Domain for 5kcj:
  - Domain d5kcjb_: 5kcj B: [319626]
    Other proteins in same PDB: d5kcja_
    automated match to d5i2kb_
    complexed with 6rm, act, glu, gly
10. Domain for 5kdt:
  - Domain d5kdtb_: 5kdt B: [319659]
    Other proteins in same PDB: d5kdta_
    automated match to d5i2kb_
    complexed with 6rv, act, glu, gly
11. Domain for 5tp9:
  - Domain d5tp9b_: 5tp9 B: [326825]
    Other proteins in same PDB: d5tp9a_
    automated match to d5i2kb_
    complexed with 7h0, act, ca, glu, gly
12. Domain for 5tpa:
  - Domain d5tpab_: 5tpa B: [326840]
    Other proteins in same PDB: d5tpaa_
    automated match to d5i2kb_
    complexed with 7h2, glu, gly
Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (27 PDB entries)
1. Domain for 1pb7:
  - Domain d1pb7a_: 1pb7 A: [88025]
    complexed with gly
2. Domain for 1pb8:
  - Domain d1pb8a_: 1pb8 A: [88026]
    complexed with dsn
3. Domain for 1pb9:
  - Domain d1pb9a_: 1pb9 A: [88027]
    complexed with 4ax
4. Domains for 1pbq:
  1. Domain d1pbqa_: 1pbq A: [88028]
    complexed with dk1
  2. Domain d1pbqb_: 1pbq B: [88029]
    complexed with dk1
5. Domains for 1y1m:
  1. Domain d1y1ma_: 1y1m A: [122548]
    automated match to d1pb7a_
    complexed with ac5
  2. Domain d1y1mb_: 1y1m B: [122549]
    automated match to d1pb7a_
    complexed with ac5
6. Domain for 1y1z:
  - Domain d1y1za_: 1y1z A: [122552]
    automated match to d1pb7a_
    complexed with 192
7. Domain for 1y20:
  - Domain d1y20a_: 1y20 A: [122553]
    automated match to d1pb7a_
    complexed with 1ac
8. Domain for 2a5t:
  - Domain d2a5ta_: 2a5t A: [126179]
    Other proteins in same PDB: d2a5tb_
    automated match to d1pb7a_
    complexed with glu, gly
9. Domain for 4kcc:
  - Domain d4kcca_: 4kcc A: [227585]
    automated match to d1pb7a_
    complexed with po4
10. Domains for 4kfq:
  1. Domain d4kfqa_: 4kfq A: [228215]
    automated match to d1pb7a_
    complexed with gol, kfq, so4
  2. Domain d4kfqb_: 4kfq B: [228214]
    automated match to d1pb7a_
    complexed with gol, kfq, so4
11. Domain for 4nf4:
  - Domain d4nf4a_: 4nf4 A: [237676]
    Other proteins in same PDB: d4nf4b_
    automated match to d1pb7a_
    complexed with 2jk, glu
12. Domain for 4nf5:
  - Domain d4nf5a_: 4nf5 A: [237675]
    Other proteins in same PDB: d4nf5b_
    automated match to d1pb7a_
    complexed with 2jj, gly, gol
13. Domain for 4nf6:
  - Domain d4nf6a_: 4nf6 A: [237677]
    Other proteins in same PDB: d4nf6b_
    automated match to d1pb7a_
    complexed with 2jl, gly
14. Domain for 4nf8:
  - Domain d4nf8a_: 4nf8 A: [237678]
    Other proteins in same PDB: d4nf8b_
    automated match to d4kcca_
    complexed with glu, gly
15. Domain for 5ddn:
  - Domain d5ddna_: 5ddn A: [322493]
    Other proteins in same PDB: d5ddnb_
    automated match to d1pb7a_
    complexed with 5dx, gly
16. Domain for 5ddx:
  - Domain d5ddxa_: 5ddx A: [322489]
    Other proteins in same PDB: d5ddxb_
    automated match to d1pb7a_
    complexed with 5dy, gly, peg, trs
17. Domain for 5de4:
  - Domain d5de4a_: 5de4 A: [322472]
    Other proteins in same PDB: d5de4b_
    automated match to d1pb7a_
    complexed with 5dz, gly, peg
18. Domain for 5dex:
  - Domain d5dexa_: 5dex A: [322468]
    Other proteins in same PDB: d5dexb_
    automated match to d1pb7a_
    complexed with 5e0, gly
19. Domain for 5i56:
  - Domain d5i56a_: 5i56 A: [322393]
    Other proteins in same PDB: d5i56b_
    automated match to d1pb7a_
    complexed with 67p, glu, gly
20. Domain for 5i57:
  - Domain d5i57a_: 5i57 A: [322915]
    Other proteins in same PDB: d5i57b_
    automated match to d1pb7a_
    complexed with glu, gly
21. Domain for 5i58:
  - Domain d5i58a_: 5i58 A: [322931]
    Other proteins in same PDB: d5i58b_
    automated match to d1pb7a_
    complexed with 67r, glu, gly
22. Domain for 5i59:
  - Domain d5i59a_: 5i59 A: [322951]
    Other proteins in same PDB: d5i59b_
    automated match to d1pb7a_
    complexed with 67q, glu, gly
23. Domain for 5jty:
  - Domain d5jtya_: 5jty A: [323000]
    Other proteins in same PDB: d5jtyb_
    automated match to d1pb7a_
    complexed with 2jk, 6nd, glu
24. Domain for 5u8c:
  - Domain d5u8ca_: 5u8c A: [334266]
    Other proteins in same PDB: d5u8cb_
    automated match to d1pb7a_
    complexed with 84j, gly, gol
25. Domain for 5vih:
  - Domain d5viha_: 5vih A: [333632]
    Other proteins in same PDB: d5vihb_
    automated match to d1pb7a_
    complexed with 5dz, gly, peg
26. Domain for 5vii:
  - Domain d5viia_: 5vii A: [333568]
    Other proteins in same PDB: d5viib_
    automated match to d1pb7a_
    complexed with 5dy, gly, peg, trs
27. Domain for 5vij:
  - Domain d5vija_: 5vij A: [333567]
    Other proteins in same PDB: d5vijb_
    automated match to d1pb7a_
    complexed with 5dx, gly
Norway rat (Rattus norvegicus), subtype 2A [TaxId:10116] [142803] (1 PDB entry)
Uniprot Q00959 404-539,661-801
- Domain for 2a5s:
  - Domain d2a5sa1: 2a5s A:7-142,A:145-285 [126178]
    complexed with glu

More info for Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like

Timeline for Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like:

Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like first appeared in SCOP 1.65
Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like appears in SCOPe 2.05
Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like appears in SCOPe 2.07
Protein N-methyl-D-aspartate receptor subunit 1 from c.94.1.1: Phosphate binding protein-like appears in the current release, SCOPe 2.08