SCOPe 2.03: Family c.116.1.5: YggJ C-terminal domain-like

Lineage for Family c.116.1.5: YggJ C-terminal domain-like

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.5: YggJ C-terminal domain-like [89632] (4 proteins)
   contains extra strand (3) in the parallel beta-sheet, order 321546; similar dimerisation to the MTH1 domain

Proteins:

1. Hypothetical protein HI0303 [89633] (1 species)

   • Species Haemophilus influenzae [TaxId:727] [89634] (2 PDB entries)

2. Hypothetical protein TTHA0657 (TT1575) [117494] (1 species)

   • Species Thermus thermophilus [TaxId:274] [117495] (3 PDB entries)
     Uniprot Q5SKI6

3. Hypothetical protein YqeU [102281] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [102282] (1 PDB entry)

4. automated matches [227088] (1 species)
   not a true protein

   • Species Escherichia coli [TaxId:83333] [226466] (1 PDB entry)

More info for Family c.116.1.5: YggJ C-terminal domain-like

Timeline for Family c.116.1.5: YggJ C-terminal domain-like:

• Family c.116.1.5: YggJ C-terminal domain-like first appeared in SCOP 1.65
  
• Family c.116.1.5: YggJ C-terminal domain-like appears in SCOPe 2.02
  
• Family c.116.1.5: YggJ C-terminal domain-like appears in SCOPe 2.04
  
• Family c.116.1.5: YggJ C-terminal domain-like appears in the current release, SCOPe 2.08