SCOPe 2.06: Family c.6.2.3: NodB-like polysaccharide deacetylase

Lineage for Family c.6.2.3: NodB-like polysaccharide deacetylase

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.6: 7-stranded beta/alpha barrel [51988] (3 superfamilies)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands

4. Superfamily c.6.2: Glycoside hydrolase/deacetylase [88713] (9 families)
   in the different families beta-barrels are similarly distorted but may vary in the number of strands

5. Family c.6.2.3: NodB-like polysaccharide deacetylase [89559] (7 proteins)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

Proteins:

1. Acetyl-xylan esterase [141961] (1 species)

   • Species Streptomyces lividans [TaxId:1916] [141962] (1 PDB entry)
     Uniprot Q54413 42-233

2. Chitin deacetylase [141953] (1 species)

   • Species Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId:290576] [141954] (1 PDB entry)
     Uniprot Q6DWK3 29-248

3. Peptidoglycan GlcNAc deacetylase C-terminal domain [141959] (1 species)

   • Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [141960] (2 PDB entries)
     Uniprot Q8DP63 268-463

4. Probable polysaccharide deacetylase PdaA [89560] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [89561] (1 PDB entry)

5. Putative polysaccharide deacetylase BA0424 [141957] (1 species)

   • Species Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [141958] (1 PDB entry)
     Uniprot Q81Z49 54-258

6. Xylanase XynA C-terminal domain [141955] (1 species)

   • Species Clostridium thermocellum [TaxId:1515] [141956] (1 PDB entry)
     Uniprot O87119 480-683

7. automated matches [190086] (3 species)
   not a true protein

   1. Species Bacillus subtilis [TaxId:1423] [186808] (3 PDB entries)

   2. Species Clostridium thermocellum [TaxId:1515] [187519] (1 PDB entry)

   3. Species Streptomyces lividans [TaxId:1916] [187533] (1 PDB entry)

More info for Family c.6.2.3: NodB-like polysaccharide deacetylase

Timeline for Family c.6.2.3: NodB-like polysaccharide deacetylase:

• Family c.6.2.3: NodB-like polysaccharide deacetylase first appeared in SCOP 1.65
  
• Family c.6.2.3: NodB-like polysaccharide deacetylase appears in SCOPe 2.05
  
• Family c.6.2.3: NodB-like polysaccharide deacetylase appears in SCOPe 2.07
  
• Family c.6.2.3: NodB-like polysaccharide deacetylase appears in the current release, SCOPe 2.08