SCOPe 2.08: Protein: Glucosylceramidase, catalytic domain

Lineage for Protein: Glucosylceramidase, catalytic domain

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.3: beta-glycanases [51487] (27 proteins)
consist of a number of sequence families
Protein Glucosylceramidase, catalytic domain [89473] (1 species)
acid-beta-glucosidase; glycosyl hydrolase family 30; contains additional beta-domain similar to one found in alpha amylases

Species:

Human (Homo sapiens) [TaxId:9606] [89474] (23 PDB entries)
1. Domains for 1ogs:
  1. Domain d1ogsa2: 1ogs A:78-431 [86998]
    Other proteins in same PDB: d1ogsa1, d1ogsb1
    complexed with nag, so4
  2. Domain d1ogsb2: 1ogs B:78-431 [87000]
    Other proteins in same PDB: d1ogsa1, d1ogsb1
    complexed with nag, so4
2. Domains for 1y7v:
  1. Domain d1y7va2: 1y7v A:78-431 [122726]
    Other proteins in same PDB: d1y7va1, d1y7vb1
    automated match to d1ogsa2
    complexed with ins, so4
  2. Domain d1y7vb2: 1y7v B:78-431 [122728]
    Other proteins in same PDB: d1y7va1, d1y7vb1
    automated match to d1ogsa2
    complexed with ins, so4
3. Domains for 2f61:
  1. Domain d2f61a2: 2f61 A:78-431 [133018]
    Other proteins in same PDB: d2f61a1, d2f61b1
    automated match to d1ogsa2
    complexed with nag, so4
  2. Domain d2f61b2: 2f61 B:78-431 [133020]
    Other proteins in same PDB: d2f61a1, d2f61b1
    automated match to d1ogsa2
    complexed with nag, so4
4. Domains for 2j25:
  1. Domain d2j25a2: 2j25 A:78-431 [137956]
    Other proteins in same PDB: d2j25a1, d2j25b1
    automated match to d1ogsa2
    complexed with nag, so4
  2. Domain d2j25b2: 2j25 B:78-431 [137958]
    Other proteins in same PDB: d2j25a1, d2j25b1
    automated match to d1ogsa2
    complexed with nag, so4
5. Domains for 2nsx:
  1. Domain d2nsxa2: 2nsx A:78-431 [138553]
    Other proteins in same PDB: d2nsxa1, d2nsxb1, d2nsxc1, d2nsxd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, so4
  2. Domain d2nsxb2: 2nsx B:78-431 [138555]
    Other proteins in same PDB: d2nsxa1, d2nsxb1, d2nsxc1, d2nsxd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, so4
  3. Domain d2nsxc2: 2nsx C:78-431 [138557]
    Other proteins in same PDB: d2nsxa1, d2nsxb1, d2nsxc1, d2nsxd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, so4
  4. Domain d2nsxd2: 2nsx D:78-431 [138559]
    Other proteins in same PDB: d2nsxa1, d2nsxb1, d2nsxc1, d2nsxd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, so4
6. Domains for 2nt0:
  1. Domain d2nt0a2: 2nt0 A:78-431 [138562]
    Other proteins in same PDB: d2nt0a1, d2nt0b1, d2nt0c1, d2nt0d1
    automated match to d1ogsa2
    complexed with gol, nag, so4
  2. Domain d2nt0b2: 2nt0 B:78-431 [138564]
    Other proteins in same PDB: d2nt0a1, d2nt0b1, d2nt0c1, d2nt0d1
    automated match to d1ogsa2
    complexed with gol, nag, so4
  3. Domain d2nt0c2: 2nt0 C:78-431 [138566]
    Other proteins in same PDB: d2nt0a1, d2nt0b1, d2nt0c1, d2nt0d1
    automated match to d1ogsa2
    complexed with gol, nag, so4
  4. Domain d2nt0d2: 2nt0 D:78-431 [138568]
    Other proteins in same PDB: d2nt0a1, d2nt0b1, d2nt0c1, d2nt0d1
    automated match to d1ogsa2
    complexed with gol, nag, so4
7. Domains for 2nt1:
  1. Domain d2nt1a2: 2nt1 A:78-431 [138570]
    Other proteins in same PDB: d2nt1a1, d2nt1b1, d2nt1c1, d2nt1d1
    automated match to d1ogsa2
    complexed with nag, po4
  2. Domain d2nt1b2: 2nt1 B:78-431 [138572]
    Other proteins in same PDB: d2nt1a1, d2nt1b1, d2nt1c1, d2nt1d1
    automated match to d1ogsa2
    complexed with nag, po4
  3. Domain d2nt1c2: 2nt1 C:78-431 [138574]
    Other proteins in same PDB: d2nt1a1, d2nt1b1, d2nt1c1, d2nt1d1
    automated match to d1ogsa2
    complexed with nag, po4
  4. Domain d2nt1d2: 2nt1 D:78-431 [138576]
    Other proteins in same PDB: d2nt1a1, d2nt1b1, d2nt1c1, d2nt1d1
    automated match to d1ogsa2
    complexed with nag, po4
8. Domains for 2v3d:
  1. Domain d2v3da2: 2v3d A:78-431 [152446]
    Other proteins in same PDB: d2v3da1, d2v3db1
    automatically matched to d1ogsa2
    complexed with nag, nbv, so4
  2. Domain d2v3db2: 2v3d B:78-431 [152448]
    Other proteins in same PDB: d2v3da1, d2v3db1
    automatically matched to d1ogsa2
    complexed with nag, nbv, so4
9. Domains for 2v3e:
  1. Domain d2v3ea2: 2v3e A:78-431 [152450]
    Other proteins in same PDB: d2v3ea1, d2v3eb1
    automatically matched to d1ogsa2
    complexed with nag, nnd, po4
  2. Domain d2v3eb2: 2v3e B:78-431 [152452]
    Other proteins in same PDB: d2v3ea1, d2v3eb1
    automatically matched to d1ogsa2
    complexed with nag, nnd, po4
10. Domains for 2v3f:
  1. Domain d2v3fa2: 2v3f A:78-431 [152454]
    Other proteins in same PDB: d2v3fa1, d2v3fb1
    automatically matched to d1ogsa2
    complexed with btb, so4
  2. Domain d2v3fb2: 2v3f B:78-431 [152456]
    Other proteins in same PDB: d2v3fa1, d2v3fb1
    automatically matched to d1ogsa2
    complexed with btb, so4
11. Domains for 2vt0:
  1. Domain d2vt0a2: 2vt0 A:78-431 [153534]
    Other proteins in same PDB: d2vt0a1, d2vt0b1
    automatically matched to d1ogsa2
    complexed with cbu, so4
  2. Domain d2vt0b2: 2vt0 B:78-431 [153536]
    Other proteins in same PDB: d2vt0a1, d2vt0b1
    automatically matched to d1ogsa2
    complexed with cbu, so4
12. Domains for 3gxd:
  1. Domain d3gxda2: 3gxd A:78-431 [210691]
    Other proteins in same PDB: d3gxda1, d3gxdb1, d3gxdc1, d3gxdd1
    automated match to d1ogsa2
    complexed with nag, po4
  2. Domain d3gxdb2: 3gxd B:78-431 [210693]
    Other proteins in same PDB: d3gxda1, d3gxdb1, d3gxdc1, d3gxdd1
    automated match to d1ogsa2
    complexed with nag, po4
  3. Domain d3gxdc2: 3gxd C:78-431 [210695]
    Other proteins in same PDB: d3gxda1, d3gxdb1, d3gxdc1, d3gxdd1
    automated match to d1ogsa2
    complexed with nag, po4
  4. Domain d3gxdd2: 3gxd D:78-431 [210697]
    Other proteins in same PDB: d3gxda1, d3gxdb1, d3gxdc1, d3gxdd1
    automated match to d1ogsa2
    complexed with nag, po4
13. Domains for 3gxf:
  1. Domain d3gxfa2: 3gxf A:78-431 [210699]
    Other proteins in same PDB: d3gxfa1, d3gxfb1, d3gxfc1, d3gxfd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, po4
  2. Domain d3gxfb2: 3gxf B:78-431 [210701]
    Other proteins in same PDB: d3gxfa1, d3gxfb1, d3gxfc1, d3gxfd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, po4
  3. Domain d3gxfc2: 3gxf C:78-431 [210703]
    Other proteins in same PDB: d3gxfa1, d3gxfb1, d3gxfc1, d3gxfd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, po4
  4. Domain d3gxfd2: 3gxf D:78-431 [210705]
    Other proteins in same PDB: d3gxfa1, d3gxfb1, d3gxfc1, d3gxfd1
    automated match to d1ogsa2
    complexed with gol, ifm, nag, po4
14. Domains for 3gxi:
  1. Domain d3gxia2: 3gxi A:78-431 [210707]
    Other proteins in same PDB: d3gxia1, d3gxib1, d3gxic1, d3gxid1
    automated match to d1ogsa2
    complexed with nag, po4
  2. Domain d3gxib2: 3gxi B:78-431 [210709]
    Other proteins in same PDB: d3gxia1, d3gxib1, d3gxic1, d3gxid1
    automated match to d1ogsa2
    complexed with nag, po4
  3. Domain d3gxic2: 3gxi C:78-431 [210711]
    Other proteins in same PDB: d3gxia1, d3gxib1, d3gxic1, d3gxid1
    automated match to d1ogsa2
    complexed with nag, po4
  4. Domain d3gxid2: 3gxi D:78-431 [210713]
    Other proteins in same PDB: d3gxia1, d3gxib1, d3gxic1, d3gxid1
    automated match to d1ogsa2
    complexed with nag, po4
15. Domains for 3gxm:
  1. Domain d3gxma2: 3gxm A:78-431 [210715]
    Other proteins in same PDB: d3gxma1, d3gxmb1, d3gxmc1, d3gxmd1
    automated match to d1ogsa2
    complexed with nag, so4
  2. Domain d3gxmb2: 3gxm B:78-431 [210717]
    Other proteins in same PDB: d3gxma1, d3gxmb1, d3gxmc1, d3gxmd1
    automated match to d1ogsa2
    complexed with nag, so4
  3. Domain d3gxmc2: 3gxm C:78-431 [210719]
    Other proteins in same PDB: d3gxma1, d3gxmb1, d3gxmc1, d3gxmd1
    automated match to d1ogsa2
    complexed with nag, so4
  4. Domain d3gxmd2: 3gxm D:78-431 [210721]
    Other proteins in same PDB: d3gxma1, d3gxmb1, d3gxmc1, d3gxmd1
    automated match to d1ogsa2
    complexed with nag, so4
16. Domains for 3rik:
  1. Domain d3rika2: 3rik A:78-431 [215839]
    Other proteins in same PDB: d3rika1, d3rikb1, d3rikc1, d3rikd1
    automated match to d1ogsa2
    complexed with 3ri, nag, so4
  2. Domain d3rikb2: 3rik B:78-431 [215841]
    Other proteins in same PDB: d3rika1, d3rikb1, d3rikc1, d3rikd1
    automated match to d1ogsa2
    complexed with 3ri, nag, so4
  3. Domain d3rikc2: 3rik C:78-431 [215843]
    Other proteins in same PDB: d3rika1, d3rikb1, d3rikc1, d3rikd1
    automated match to d1ogsa2
    complexed with 3ri, nag, so4
  4. Domain d3rikd2: 3rik D:78-431 [215845]
    Other proteins in same PDB: d3rika1, d3rikb1, d3rikc1, d3rikd1
    automated match to d1ogsa2
    complexed with 3ri, nag, so4
17. Domains for 3ril:
  1. Domain d3rila2: 3ril A:78-431 [215847]
    Other proteins in same PDB: d3rila1, d3rilb1, d3rilc1, d3rild1
    automated match to d1ogsa2
    complexed with 3rk, nag, so4
  2. Domain d3rilb2: 3ril B:78-431 [215849]
    Other proteins in same PDB: d3rila1, d3rilb1, d3rilc1, d3rild1
    automated match to d1ogsa2
    complexed with 3rk, nag, so4
  3. Domain d3rilc2: 3ril C:78-431 [215851]
    Other proteins in same PDB: d3rila1, d3rilb1, d3rilc1, d3rild1
    automated match to d1ogsa2
    complexed with 3rk, nag, so4
  4. Domain d3rild2: 3ril D:78-431 [215853]
    Other proteins in same PDB: d3rila1, d3rilb1, d3rilc1, d3rild1
    automated match to d1ogsa2
    complexed with 3rk, nag, so4
18. Domains for 6moz:
  1. Domain d6moza2: 6moz A:78-431 [370636]
    Other proteins in same PDB: d6moza1, d6mozb1
    automated match to d1ogsa2
    complexed with gol, jxa, na, nag, po4
  2. Domain d6mozb2: 6moz B:78-431 [370647]
    Other proteins in same PDB: d6moza1, d6mozb1
    automated match to d1ogsa2
    complexed with gol, jxa, na, nag, po4
19. Domains for 6q1n:
  1. Domain d6q1na2: 6q1n A:78-431 [391186]
    Other proteins in same PDB: d6q1na1, d6q1nb1
    automated match to d1ogsa2
    complexed with edo, nag, p9v, so4
  2. Domain d6q1nb2: 6q1n B:78-431 [391182]
    Other proteins in same PDB: d6q1na1, d6q1nb1
    automated match to d1ogsa2
    complexed with edo, nag, p9v, so4
20. Domains for 6q1p:
  1. Domain d6q1pa2: 6q1p A:78-431 [391266]
    Other proteins in same PDB: d6q1pa1, d6q1pb1
    automated match to d1ogsa2
    complexed with edo, nag, p8y, so4
  2. Domain d6q1pb2: 6q1p B:78-431 [391221]
    Other proteins in same PDB: d6q1pa1, d6q1pb1
    automated match to d1ogsa2
    complexed with edo, nag, p8y, so4
21. Domains for 6q6k:
  1. Domain d6q6ka2: 6q6k A:78-431 [366944]
    Other proteins in same PDB: d6q6ka1, d6q6kb1
    automated match to d1ogsa2
    complexed with act, hkw, nag, so4
  2. Domain d6q6kb2: 6q6k B:78-431 [366996]
    Other proteins in same PDB: d6q6ka1, d6q6kb1
    automated match to d1ogsa2
    complexed with act, hkw, nag, so4
22. Domains for 6q6l:
  1. Domain d6q6la2: 6q6l A:78-431 [366940]
    Other proteins in same PDB: d6q6la1, d6q6lb1
    automated match to d1ogsa2
    complexed with act, nag, rjr, so4
  2. Domain d6q6lb2: 6q6l B:78-431 [366978]
    Other proteins in same PDB: d6q6la1, d6q6lb1
    automated match to d1ogsa2
    complexed with act, nag, rjr, so4
23. Domains for 6q6n:
  1. Domain d6q6na2: 6q6n A:78-431 [366951]
    Other proteins in same PDB: d6q6na1, d6q6nb1
    automated match to d1ogsa2
    complexed with act, hk2, nag, so4
  2. Domain d6q6nb2: 6q6n B:78-431 [366917]
    Other proteins in same PDB: d6q6na1, d6q6nb1
    automated match to d1ogsa2
    complexed with act, hk2, nag, so4

More info for Protein Glucosylceramidase, catalytic domain from c.1.8.3: beta-glycanases

Timeline for Protein Glucosylceramidase, catalytic domain from c.1.8.3: beta-glycanases:

Protein Glucosylceramidase, catalytic domain from c.1.8.3: beta-glycanases first appeared in SCOP 1.65
Protein Glucosylceramidase, catalytic domain from c.1.8.3: beta-glycanases appears in SCOPe 2.07