SCOPe 2.07: Protein: Diaminopimelate decarboxylase LysA

Lineage for Protein: Diaminopimelate decarboxylase LysA

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)

Fold b.49: Domain of alpha and beta subunits of F1 ATP synthase-like [50614] (4 superfamilies)
barrel, closed; n=6, S=8; greek-key
Many cradle-loop superfamilies may be homologous, according to PubMed 18457946

Superfamily b.49.2: Alanine racemase C-terminal domain-like [50621] (2 families)
the barrel is decorated with additional structures
Family b.49.2.3: Eukaryotic ODC-like [88683] (2 proteins)
barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel
Protein Diaminopimelate decarboxylase LysA [89350] (3 species)

Species:

Escherichia coli [TaxId:562] [101820] (2 PDB entries)
1. Domain for 1knw:
  - Domain d1knwa1: 1knw A:2-31,A:279-420 [90969]
    Other proteins in same PDB: d1knwa2, d1knwa3
    complexed with li, mes, plp, so4
2. Domain for 1ko0:
  - Domain d1ko0a1: 1ko0 A:2-31,A:279-420 [90971]
    Other proteins in same PDB: d1ko0a2
    complexed with lys, plp
Methanococcus jannaschii [TaxId:2190] [110245] (2 PDB entries)
Uniprot Q58497
1. Domains for 1tuf:
  1. Domain d1tufa1: 1tuf A:15-49,A:314-448 [107335]
    Other proteins in same PDB: d1tufa2, d1tufb2
    Structural genomics target
    complexed with az1
  2. Domain d1tufb1: 1tuf B:15-49,B:314-448 [107337]
    Other proteins in same PDB: d1tufa2, d1tufb2
    Structural genomics target
    complexed with az1
2. Domains for 1twi:
  1. Domain d1twia1: 1twi A:15-49,A:314-448 [107399]
    Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
    Structural genomics target
    complexed with lys, mg, plp
  2. Domain d1twib1: 1twi B:15-49,B:314-448 [107401]
    Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
    Structural genomics target
    complexed with lys, mg, plp
  3. Domain d1twic1: 1twi C:15-49,C:314-448 [107403]
    Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
    Structural genomics target
    complexed with lys, mg, plp
  4. Domain d1twid1: 1twi D:15-49,D:314-448 [107405]
    Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
    Structural genomics target
    complexed with lys, mg, plp
Mycobacterium tuberculosis [TaxId:1773] [89351] (2 PDB entries)
1. Domains for 1hkv:
  1. Domain d1hkva1: 1hkv A:2-45,A:311-447 [83559]
    Other proteins in same PDB: d1hkva2, d1hkvb2
    complexed with lys, plp
  2. Domain d1hkvb1: 1hkv B:2-45,B:311-447 [83561]
    Other proteins in same PDB: d1hkva2, d1hkvb2
    complexed with lys, plp
2. Domains for 1hkw:
  1. Domain d1hkwa1: 1hkw A:2-45,A:311-447 [83563]
    Other proteins in same PDB: d1hkwa2, d1hkwb2
    complexed with so4
  2. Domain d1hkwb1: 1hkw B:3-45,B:311-446 [83565]
    Other proteins in same PDB: d1hkwa2, d1hkwb2
    complexed with so4

More info for Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like

Timeline for Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like:

Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like first appeared in SCOP 1.65
Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like appears in SCOPe 2.06
Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like appears in the current release, SCOPe 2.08