Lineage for Protein: Diaminopimelate decarboxylase LysA

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2390559Fold b.49: Domain of alpha and beta subunits of F1 ATP synthase-like [50614] (4 superfamilies)
    barrel, closed; n=6, S=8; greek-key
    Many cradle-loop superfamilies may be homologous, according to PubMed 18457946
  4. 2390884Superfamily b.49.2: Alanine racemase C-terminal domain-like [50621] (2 families) (S)
    the barrel is decorated with additional structures
  5. 2390920Family b.49.2.3: Eukaryotic ODC-like [88683] (2 protein domains)
    barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel
  6. 2390921Protein Diaminopimelate decarboxylase LysA [89350] (3 species)

Species:

  1. 2390922Escherichia coli [TaxId:562] [101820] (2 PDB entries)
    1. Domain for 1knw:
    2. Domain for 1ko0:
  2. 2390925Methanococcus jannaschii [TaxId:2190] [110245] (2 PDB entries)
    Uniprot Q58497
    1. Domains for 1tuf:
      1. 2390930Domain d1tufa1: 1tuf A:15-49,A:314-448 [107335]
        Other proteins in same PDB: d1tufa2, d1tufb2
        Structural genomics target
        complexed with az1
      2. 2390931Domain d1tufb1: 1tuf B:15-49,B:314-448 [107337]
        Other proteins in same PDB: d1tufa2, d1tufb2
        Structural genomics target
        complexed with az1
    2. Domains for 1twi:
      1. 2390926Domain d1twia1: 1twi A:15-49,A:314-448 [107399]
        Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
        Structural genomics target
        complexed with lys, mg, plp
      2. 2390927Domain d1twib1: 1twi B:15-49,B:314-448 [107401]
        Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
        Structural genomics target
        complexed with lys, mg, plp
      3. 2390928Domain d1twic1: 1twi C:15-49,C:314-448 [107403]
        Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
        Structural genomics target
        complexed with lys, mg, plp
      4. 2390929Domain d1twid1: 1twi D:15-49,D:314-448 [107405]
        Other proteins in same PDB: d1twia2, d1twib2, d1twic2, d1twid2
        Structural genomics target
        complexed with lys, mg, plp
  3. 2390932Mycobacterium tuberculosis [TaxId:1773] [89351] (2 PDB entries)
    1. Domains for 1hkv:
      1. 2390933Domain d1hkva1: 1hkv A:2-45,A:311-447 [83559]
        Other proteins in same PDB: d1hkva2, d1hkvb2
        complexed with lys, plp
      2. 2390934Domain d1hkvb1: 1hkv B:2-45,B:311-447 [83561]
        Other proteins in same PDB: d1hkva2, d1hkvb2
        complexed with lys, plp
    2. Domains for 1hkw:
      1. 2390935Domain d1hkwa1: 1hkw A:2-45,A:311-447 [83563]
        Other proteins in same PDB: d1hkwa2, d1hkwb2
        complexed with so4
      2. 2390936Domain d1hkwb1: 1hkw B:3-45,B:311-446 [83565]
        Other proteins in same PDB: d1hkwa2, d1hkwb2
        complexed with so4

More info for Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like

Timeline for Protein Diaminopimelate decarboxylase LysA from b.49.2.3: Eukaryotic ODC-like: