Lineage for Species: SARS coronavirus [TaxId: 227859]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055629Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2055630Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2057856Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 protein domains)
  6. 2057913Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (6 species)
    contains an extra alpha-helical domain
  7. 2057935Species SARS coronavirus [TaxId:227859] [89349] (71 PDB entries)

PDB entries in Species: SARS coronavirus [TaxId: 227859]:

  1. Domain(s) for 1q2w:
    1. 2057956Domain d1q2wa_: 1q2w A: [88355]
      Other proteins in same PDB: d1q2wb2
      complexed with mpd
    2. 2057957Domain d1q2wb1: 1q2w B:1-301 [88356]
      Other proteins in same PDB: d1q2wb2
      complexed with mpd
  2. Domain(s) for 1uj1:
    1. 2057969Domain d1uj1a_: 1uj1 A: [99450]
    2. 2057970Domain d1uj1b_: 1uj1 B: [99451]
  3. Domain(s) for 1uk2:
    1. 2057994Domain d1uk2a_: 1uk2 A: [99481]
    2. 2057995Domain d1uk2b_: 1uk2 B: [99482]
  4. Domain(s) for 1uk3:
    1. 2058006Domain d1uk3a_: 1uk3 A: [99483]
    2. 2058007Domain d1uk3b_: 1uk3 B: [99484]
  5. Domain(s) for 1uk4:
    1. 2058008Domain d1uk4a_: 1uk4 A: [99485]
      complexed with ato
    2. 2058009Domain d1uk4b_: 1uk4 B: [99486]
      complexed with ato
  6. Domain(s) for 1z1i:
  7. Domain(s) for 1z1j:
    1. 2058025Domain d1z1ja_: 1z1j A: [162357]
      automated match to d1uj1b_
      mutant
    2. 2058026Domain d1z1jb_: 1z1j B: [162358]
      automated match to d1uj1b_
      mutant
  8. Domain(s) for 2a5a:
  9. Domain(s) for 2a5i:
  10. Domain(s) for 2a5k:
    1. 2057986Domain d2a5ka_: 2a5k A: [162694]
      automated match to d1uj1b_
      complexed with azp
    2. 2057987Domain d2a5kb_: 2a5k B: [162695]
      automated match to d1uj1b_
      complexed with azp
  11. Domain(s) for 2alv:
  12. Domain(s) for 2c3s:
  13. Domain(s) for 2duc:
    1. 2057941Domain d2duca_: 2duc A: [146586]
      automated match to d1uj1b_
    2. 2057942Domain d2ducb_: 2duc B: [146587]
      automated match to d1uj1b_
  14. Domain(s) for 2gt7:
    1. 2057948Domain d2gt7a_: 2gt7 A: [164833]
      automated match to d1uj1b_
      complexed with mes
    2. 2057949Domain d2gt7b_: 2gt7 B: [164834]
      automated match to d1uj1b_
      complexed with mes
  15. Domain(s) for 2gt8:
  16. Domain(s) for 2gtb:
  17. Domain(s) for 2gx4:
  18. Domain(s) for 2gz7:
  19. Domain(s) for 2gz8:
  20. Domain(s) for 2gz9:
  21. Domain(s) for 2h2z:
  22. Domain(s) for 2hob:
  23. Domain(s) for 2op9:
    1. 2057945Domain d2op9a2: 2op9 A:1-301 [148961]
      Other proteins in same PDB: d2op9a3
      automated match to d1q2wb_
      complexed with wr1
    2. 2057946Domain d2op9b_: 2op9 B: [148962]
      Other proteins in same PDB: d2op9a3
      automated match to d1q2wb_
      complexed with wr1
  24. Domain(s) for 2pwx:
  25. Domain(s) for 2q6g:
    1. 2058001Domain d2q6ga_: 2q6g A: [167455]
      automated match to d1uj1b_
      mutant
    2. 2058002Domain d2q6gb_: 2q6g B: [167456]
      automated match to d1uj1b_
      mutant
  26. Domain(s) for 2qc2:
    1. 2058011Domain d2qc2a1: 2qc2 A:1-304 [167515]
      Other proteins in same PDB: d2qc2a2
      automated match to d1uj1b_
      mutant
    2. 2058012Domain d2qc2b_: 2qc2 B: [167516]
      Other proteins in same PDB: d2qc2a2
      automated match to d1uj1b_
      mutant
  27. Domain(s) for 2qcy:
  28. Domain(s) for 2qiq:
  29. Domain(s) for 2v6n:
  30. Domain(s) for 2z3c:
  31. Domain(s) for 2z3d:
  32. Domain(s) for 2z3e:
  33. Domain(s) for 2z94:
  34. Domain(s) for 2z9g:
  35. Domain(s) for 2z9j:
    1. 2057965Domain d2z9ja_: 2z9j A: [154254]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, dtz
    2. 2057966Domain d2z9jb_: 2z9j B: [154255]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, dtz
  36. Domain(s) for 2z9k:
    1. 2057952Domain d2z9ka_: 2z9k A: [154256]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, doz
    2. 2057953Domain d2z9kb_: 2z9k B: [154257]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, doz
  37. Domain(s) for 2z9l:
    1. 2057981Domain d2z9la_: 2z9l A: [154258]
      automated match to d1uj1b_
      complexed with daz, dms
    2. 2057982Domain d2z9lb_: 2z9l B: [154259]
      automated match to d1uj1b_
      complexed with daz, dms
  38. Domain(s) for 2zu4:
  39. Domain(s) for 2zu5:
  40. Domain(s) for 3atw:
    1. 2058020Domain d3atwa_: 3atw A: [172333]
      automated match to d1uj1b_
    2. 2058021Domain d3atwb_: 3atw B: [172334]
      automated match to d1uj1b_
  41. Domain(s) for 3avz:
  42. Domain(s) for 3aw0:
  43. Domain(s) for 3aw1:
    1. 2057996Domain d3aw1a_: 3aw1 A: [172360]
      automated match to d1uj1b_
      mutant
    2. 2057997Domain d3aw1b_: 3aw1 B: [172361]
      automated match to d1uj1b_
      mutant
  44. Domain(s) for 3d62:
  45. Domain(s) for 3f9e:
  46. Domain(s) for 3f9f:
    1. 2057992Domain d3f9fa_: 3f9f A: [175591]
      automated match to d1uj1b_
      mutant
    2. 2057993Domain d3f9fb_: 3f9f B: [175592]
      automated match to d1uj1b_
      mutant
  47. Domain(s) for 3f9g:
    1. 2058013Domain d3f9ga_: 3f9g A: [175593]
      automated match to d1q2wb_
      mutant
    2. 2058014Domain d3f9gb_: 3f9g B: [175594]
      automated match to d1q2wb_
      mutant
  48. Domain(s) for 3f9h:
    1. 2058022Domain d3f9ha_: 3f9h A: [175595]
      automated match to d1uj1b_
      mutant
    2. 2058023Domain d3f9hb_: 3f9h B: [175596]
      automated match to d1uj1b_
      mutant
  49. Domain(s) for 3fzd:
  50. Domain(s) for 3m3s:
    1. 2057990Domain d3m3sa_: 3m3s A: [180804]
      automated match to d1uj1b_
      mutant
    2. 2057991Domain d3m3sb_: 3m3s B: [180805]
      automated match to d1uj1b_
      mutant
  51. Domain(s) for 3sn8:
  52. Domain(s) for 3sna:
  53. Domain(s) for 3snb:
  54. Domain(s) for 3snc:
  55. Domain(s) for 3snd:
    1. 2057954Domain d3snda_: 3snd A: [185446]
      automated match to d1uj1b_
      complexed with mrd
    2. 2057955Domain d3sndb_: 3snd B: [185447]
      automated match to d1uj1b_
      complexed with mrd
  56. Domain(s) for 3sne:
  57. Domain(s) for 3szn:
  58. Domain(s) for 3tit:
  59. Domain(s) for 3tiu:
  60. Domain(s) for 3tns:
  61. Domain(s) for 3tnt:
  62. Domain(s) for 3v3m:
  63. Domain(s) for 3vb3:
    1. 2057977Domain d3vb3a_: 3vb3 A: [217737]
      automated match to d1uj1b_
      complexed with edo, peg
    2. 2057978Domain d3vb3b_: 3vb3 B: [217738]
      automated match to d2duca_
      complexed with edo, peg
  64. Domain(s) for 4hi3:
    1. 2057974Domain d4hi3a_: 4hi3 A: [196960]
      automated match to d1z1ja_
      mutant
    2. 2057975Domain d4hi3b_: 4hi3 B: [197388]
      automated match to d1z1ja_
      mutant
  65. Domain(s) for 4mds:
  66. Domain(s) for 4tww:
    1. 2058017Domain d4twwa_: 4tww A: [309672]
      automated match to d1z1ja_
      complexed with 3a7
    2. 2058018Domain d4twwb_: 4tww B: [309673]
      automated match to d1z1ja_
      complexed with 3a7
  67. Domain(s) for 4twx:
  68. Domain(s) for 4twy:
  69. Domain(s) for 4wy3:
  70. Domain(s) for 5c5n:
  71. Domain(s) for 5c5o:
    1. 2275386Domain d5c5oa_: 5c5o A: [318687]
      automated match to d1z1ja_
      complexed with sdj
    2. 2275491Domain d5c5ob_: 5c5o B: [318792]
      automated match to d1z1ja_
      complexed with sdj

More info for Species SARS coronavirus [TaxId:227859] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)

Timeline for Species SARS coronavirus [TaxId:227859] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2):