SCOPe 2.08: Protein: Phycocyanin beta subunit

Lineage for Protein: Phycocyanin beta subunit

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.1: Globin-like [46457] (2 superfamilies)
core: 6 helices; folded leaf, partly opened
Superfamily a.1.1: Globin-like [46458] (5 families)

Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
binds a bilin chromophore
automatically mapped to Pfam PF00502

Protein Phycocyanin beta subunit [88940] (9 species)

Species:

Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
- Domains for 1cpc:
  1. Domain d1cpcb_: 1cpc B: [15644]
    Other proteins in same PDB: d1cpca_, d1cpck_
    complexed with cyc
  2. Domain d1cpcl_: 1cpc L: [15646]
    Other proteins in same PDB: d1cpca_, d1cpck_
    complexed with cyc
Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
- Domain for 1phn:
  - Domain d1phnb_: 1phn B: [15642]
    Other proteins in same PDB: d1phna_
    complexed with cyc, peb
Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
- Domains for 1f99:
  1. Domain d1f99b_: 1f99 B: [59723]
    Other proteins in same PDB: d1f99a_, d1f99k_, d1f99m_
    complexed with bla, cyc, peb
  2. Domain d1f99l_: 1f99 L: [59725]
    Other proteins in same PDB: d1f99a_, d1f99k_, d1f99m_
    complexed with bla, cyc, peb
  3. Domain d1f99n_: 1f99 N: [59727]
    Other proteins in same PDB: d1f99a_, d1f99k_, d1f99m_
    complexed with bla, cyc, peb
Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
1. Domains for 1gh0:
  1. Domain d1gh0b_: 1gh0 B: [60492]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  2. Domain d1gh0d_: 1gh0 D: [60494]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  3. Domain d1gh0f_: 1gh0 F: [60496]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  4. Domain d1gh0h_: 1gh0 H: [60498]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  5. Domain d1gh0j_: 1gh0 J: [60500]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  6. Domain d1gh0l_: 1gh0 L: [60502]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  7. Domain d1gh0n_: 1gh0 N: [60504]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  8. Domain d1gh0p_: 1gh0 P: [60506]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  9. Domain d1gh0r_: 1gh0 R: [60508]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  10. Domain d1gh0t_: 1gh0 T: [60510]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  11. Domain d1gh0v_: 1gh0 V: [60512]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
  12. Domain d1gh0x_: 1gh0 X: [60514]
    Other proteins in same PDB: d1gh0a_, d1gh0c_, d1gh0e_, d1gh0g_, d1gh0i_, d1gh0k_, d1gh0m_, d1gh0o_, d1gh0q_, d1gh0s_, d1gh0u_, d1gh0w_
    complexed with cyc
2. Domains for 1ha7:
  1. Domain d1ha7b_: 1ha7 B: [70936]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  2. Domain d1ha7d_: 1ha7 D: [70938]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  3. Domain d1ha7f_: 1ha7 F: [70940]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  4. Domain d1ha7h_: 1ha7 H: [70942]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  5. Domain d1ha7j_: 1ha7 J: [70944]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  6. Domain d1ha7l_: 1ha7 L: [70946]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  7. Domain d1ha7n_: 1ha7 N: [70948]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  8. Domain d1ha7p_: 1ha7 P: [70950]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  9. Domain d1ha7r_: 1ha7 R: [70952]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  10. Domain d1ha7t_: 1ha7 T: [70954]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  11. Domain d1ha7v_: 1ha7 V: [70956]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
  12. Domain d1ha7x_: 1ha7 X: [70958]
    Other proteins in same PDB: d1ha7a_, d1ha7c_, d1ha7e_, d1ha7g_, d1ha7i_, d1ha7k_, d1ha7m_, d1ha7o_, d1ha7q_, d1ha7s_, d1ha7u_, d1ha7w_
    complexed with cyc
Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
- Domain for 1jbo:
  - Domain d1jbob_: 1jbo B: [84151]
    Other proteins in same PDB: d1jboa_
    complexed with cyc
Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
1. Domain for 1i7y:
  - Domain d1i7yb_: 1i7y B: [61918]
    Other proteins in same PDB: d1i7ya_
    complexed with cyc, men
2. Domain for 1ktp:
  - Domain d1ktpb_: 1ktp B: [72991]
    Other proteins in same PDB: d1ktpa_
    complexed with bla, cyc
3. Domain for 1on7:
  - Domain d1on7b_: 1on7 B: [87122]
    Other proteins in same PDB: d1on7a_
    complexed with cyc
4. Domain for 3o18:
  - Domain d3o18b_: 3o18 B: [182725]
    Other proteins in same PDB: d3o18a_
    automated match to d1i7yb_
    complexed with cyc
5. Domain for 3o2c:
  - Domain d3o2cb_: 3o2c B: [182753]
    Other proteins in same PDB: d3o2ca_
    automated match to d1i7yb_
    complexed with cyc
6. Domain for 4n6s:
  - Domain d4n6sb_: 4n6s B: [236223]
    Other proteins in same PDB: d4n6sa_
    automated match to d1ktpb_
    complexed with cyc
Thermosynechococcus elongatus [TaxId:146786] [401365] (2 PDB entries)
1. Domain for 6yqg:
  - Domain d6yqgb_: 6yqg B: [401366]
    Other proteins in same PDB: d6yqga_
    automated match to d1ktpb_
    complexed with cyc, te4
2. Domains for 6yyj:
  1. Domain d6yyjb_: 6yyj B: [401487]
    Other proteins in same PDB: d6yyja_, d6yyjc_, d6yyje_
    automated match to d1ktpb_
    complexed with mes, pge, pxq
  2. Domain d6yyjd_: 6yyj D: [401428]
    Other proteins in same PDB: d6yyja_, d6yyjc_, d6yyje_
    automated match to d1ktpb_
    complexed with mes, pge, pxq
  3. Domain d6yyjf_: 6yyj F: [401389]
    Other proteins in same PDB: d6yyja_, d6yyjc_, d6yyje_
    automated match to d1ktpb_
    complexed with mes, pge, pxq
Thermosynechococcus elongatus [TaxId:197221] [189583] (12 PDB entries)
1. Domain for 3l0f:
  - Domain d3l0fb_: 3l0f B: [179841]
    Other proteins in same PDB: d3l0fa_
    automated match to d1i7yb_
    complexed with cyc
2. Domain for 4q70:
  - Domain d4q70b_: 4q70 B: [272365]
    Other proteins in same PDB: d4q70a_
    automated match to d1ktpb_
    complexed with cyc
3. Domain for 4z8k:
  - Domain d4z8kb_: 4z8k B: [276081]
    Other proteins in same PDB: d4z8ka_
    automated match to d1ktpb_
    complexed with cyc
4. Domain for 4ziz:
  - Domain d4zizb_: 4ziz B: [276211]
    Other proteins in same PDB: d4ziza_
    automated match to d1ktpb_
    complexed with cyc
5. Domain for 5mjm:
  - Domain d5mjmb_: 5mjm B: [341515]
    Other proteins in same PDB: d5mjma_
    automated match to d1ktpb_
    complexed with cyc
6. Domain for 5mjp:
  - Domain d5mjpb_: 5mjp B: [341616]
    Other proteins in same PDB: d5mjpa_
    automated match to d1ktpb_
    complexed with cyc
7. Domain for 5mjq:
  - Domain d5mjqb_: 5mjq B: [341529]
    Other proteins in same PDB: d5mjqa_
    automated match to d1ktpb_
    complexed with cyc
8. Domain for 5o7m:
  - Domain d5o7mb_: 5o7m B: [341673]
    Other proteins in same PDB: d5o7ma_
    automated match to d1ktpb_
    complexed with cyc
9. Domain for 5uvk:
  - Domain d5uvkb_: 5uvk B: [334755]
    Other proteins in same PDB: d5uvka_
    automated match to d1jbob_
    complexed with cyc
10. Domain for 6ypq:
  - Domain d6ypqb_: 6ypq B: [401377]
    Other proteins in same PDB: d6ypqa_
    automated match to d1ktpb_
    complexed with cyc, gly, lys
11. Domain for 6yq8:
  - Domain d6yq8b_: 6yq8 B: [401331]
    Other proteins in same PDB: d6yq8a_
    automated match to d1ktpb_
    complexed with cyc, edo, gol, pge
12. Domain for 7s50:
  - Domain d7s50b_: 7s50 B: [422203]
    Other proteins in same PDB: d7s50a_
    automated match to d1i7yb_
    complexed with cl, cyc, men, na
Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
1. Domain for 4gxe:
  - Domain d4gxeb_: 4gxe B: [252348]
    Other proteins in same PDB: d4gxea_
    automated match to d1jbob_
    complexed with cyc, ure
2. Domain for 4gy3:
  - Domain d4gy3b_: 4gy3 B: [193918]
    Other proteins in same PDB: d4gy3a_
    automated match to d1jbob_
    complexed with cyc, ure

More info for Protein Phycocyanin beta subunit from a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Protein Phycocyanin beta subunit from a.1.1.3: Phycocyanin-like phycobilisome proteins:

Protein Phycocyanin beta subunit from a.1.1.3: Phycocyanin-like phycobilisome proteins first appeared in SCOP 1.65
Protein Phycocyanin beta subunit from a.1.1.3: Phycocyanin-like phycobilisome proteins appears in SCOPe 2.07