Lineage for Species: Pseudomonas putida [TaxId: 303]

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 694610Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 694611Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 695013Family c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module [88766] (4 proteins)
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  6. 695014Protein 2-oxoisovalerate dehydrogenase (E1B), PP module [88769] (1 species)
    chain A is alpha-subunit and chain B is beta-subunit
  7. 695015Species Pseudomonas putida [TaxId:303] [88770] (2 PDB entries)

PDB entries in Species: Pseudomonas putida [TaxId: 303]:

  1. Domain(s) for 1qs0:
  2. Domain(s) for 2bp7:
    1. 695017Domain d2bp7a1: 2bp7 A:2-408 [128926]
      Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
      automatically matched to d1qs0a_
    2. 695018Domain d2bp7c1: 2bp7 C:2-408 [128929]
      Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
      automatically matched to d1qs0a_
    3. 695019Domain d2bp7e1: 2bp7 E:2-408 [128932]
      Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
      automatically matched to d1qs0a_
    4. 695020Domain d2bp7g1: 2bp7 G:2-408 [128935]
      Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
      automatically matched to d1qs0a_

More info for Species Pseudomonas putida [TaxId:303] from c.36.1.11 2-oxoisovalerate dehydrogenase (E1B), PP module

Timeline for Species Pseudomonas putida [TaxId:303] from c.36.1.11 2-oxoisovalerate dehydrogenase (E1B), PP module: